Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66895 | Canola | cytosol | 14.35 | 52.63 |
| CDY02181 | Canola | endoplasmic reticulum, extracellular | 42.11 | 42.72 |
| CDY58695 | Canola | extracellular | 41.15 | 41.75 |
| PGSC0003DMT400082702 | Potato | extracellular | 29.67 | 25.0 |
| CDY29033 | Canola | cytosol | 16.75 | 19.23 |
| CDY70289 | Canola | extracellular | 28.71 | 15.11 |
| CDY02184 | Canola | plasma membrane | 32.06 | 14.66 |
| CDY58691 | Canola | plasma membrane | 32.06 | 14.63 |
| CDX87193 | Canola | plasma membrane | 31.58 | 14.47 |
| CDY16831 | Canola | plasma membrane | 31.58 | 14.41 |
| PGSC0003DMT400002674 | Potato | plasma membrane | 29.67 | 14.29 |
| PGSC0003DMT400003723 | Potato | extracellular | 28.23 | 13.59 |
| VIT_14s0083g01150.t01 | Wine grape | plasma membrane | 27.75 | 13.46 |
| CDX86358 | Canola | extracellular | 27.75 | 13.3 |
| CDX90983 | Canola | extracellular | 26.79 | 12.87 |
| CDX85277 | Canola | extracellular | 26.79 | 12.84 |
| CDX85543 | Canola | extracellular, plasma membrane, vacuole | 26.32 | 12.06 |
| CDX69511 | Canola | plasma membrane | 25.84 | 11.87 |
| CDY14723 | Canola | cytosol | 17.7 | 11.64 |
| CDY60470 | Canola | plasma membrane | 25.36 | 11.57 |
| CDY43250 | Canola | plasma membrane | 24.88 | 11.38 |
| CDY26444 | Canola | plastid | 18.66 | 10.66 |
| CDX93481 | Canola | plasma membrane | 21.53 | 10.25 |
| CDY31063 | Canola | plasma membrane | 19.62 | 9.45 |
| CDY20671 | Canola | extracellular, plasma membrane, vacuole | 19.62 | 9.01 |
| CDX70627 | Canola | cytosol, nucleus, plasma membrane | 26.79 | 6.53 |
| CDY36030 | Canola | vacuole | 18.66 | 6.02 |
| CDY34980 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 19.14 | 6.0 |
| CDY52722 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 18.66 | 5.86 |
| CDX82237 | Canola | endoplasmic reticulum, vacuole | 18.66 | 5.84 |
| CDY34424 | Canola | plasma membrane | 18.18 | 5.77 |
| CDY14283 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 18.66 | 5.71 |
| CDY32210 | Canola | plasma membrane | 17.7 | 5.61 |
| CDY49611 | Canola | plasma membrane | 17.7 | 5.59 |
| CDY00037 | Canola | plasma membrane | 17.7 | 5.59 |
| CDX97377 | Canola | endoplasmic reticulum, golgi, vacuole | 17.7 | 5.56 |
| CDX94950 | Canola | nucleus | 14.83 | 5.44 |
| CDX89278 | Canola | extracellular, golgi, vacuole | 17.22 | 5.43 |
| CDY29275 | Canola | extracellular, plasma membrane, vacuole | 17.22 | 5.41 |
| CDY43072 | Canola | plasma membrane | 18.66 | 4.62 |
| CDY19626 | Canola | mitochondrion | 9.09 | 4.61 |
| CDY09102 | Canola | cytosol | 5.74 | 4.6 |
| CDY55591 | Canola | plasma membrane | 17.7 | 4.45 |
| CDY24004 | Canola | cytosol, nucleus, plastid | 1.44 | 3.53 |
| CDY26445 | Canola | cytosol | 1.91 | 2.37 |
| CDY57659 | Canola | cytosol | 0.0 | 0.0 |
| CDY42842 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX87194 | EnsemblPlantsGene:GSBRNA2T00146120001 | GO:A0A078DFK3 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0010215 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 |
| InterPro:COBRA_pln | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF3 | PFAM:PD140986 | PFAM:PF04833 | ProteinID:CDX87194 |
| ProteinID:CDX87194.1 | TMHMM:TMhelix | UniParc:UPI0004EE51E6 | MapMan:35.1 | : | : |
Description
BnaC09g05090D
Coordinates
chrLK031849:-:1112252..1114221
Molecular Weight (calculated)
23998.1 Da
IEP (calculated)
9.674
GRAVY (calculated)
-0.176
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MCRKGSYMSR RPHSGTVLAG SSGAQRLKPD YLLFFPIPLS KSVKEMKSAV IFAWLSDCAS RVQIYSYANV YRHDEVEVKS LFSGIIFLLL VSFSCFTSLG
101: ALTSNNGNIT IKWDLMDWTP DGYIAMVTAY NNQKQHSIPS PGWKMSWRWA KKEFIPDHRW CCWYLKQYCS DGCEPTKNVM RTKFITPDLK RTTSALMTWN
201: IACVFHKAT
101: ALTSNNGNIT IKWDLMDWTP DGYIAMVTAY NNQKQHSIPS PGWKMSWRWA KKEFIPDHRW CCWYLKQYCS DGCEPTKNVM RTKFITPDLK RTTSALMTWN
201: IACVFHKAT
001: MESLFSTMIV LLLVSFSCLI STEALTSNYG NITVKWDLLN WTPDGYVAVV TAYNYQKQRS IPGWKMSWRG TKKEVIWNML GAKTTGQGGC SMFKGNIPQS
101: CVRKPTVVDL LPGTPFNQQI ANCCKSGVLK PGSESAFQLS VGSAGNSVKT ARMPANFMFT APKQQYICGP SKNVRPTRFT TADKRRITAA LMTWNITCVF
201: HKAT
101: CVRKPTVVDL LPGTPFNQQI ANCCKSGVLK PGSESAFQLS VGSAGNSVKT ARMPANFMFT APKQQYICGP SKNVRPTRFT TADKRRITAA LMTWNITCVF
201: HKAT
Arabidopsis Description
COBL5COBRA-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME5]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.