CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G009960.1	Barley	plastid	46.75	36.24
TraesCSU01G047200.1	Wheat	plastid	46.75	34.05
TraesCS3D01G047900.1	Wheat	plastid	45.56	30.92
CDY26444	Canola	plastid	63.31	29.23
CDY42842	Canola	cytosol	20.71	28.69
CDX90983	Canola	extracellular	62.72	24.37
CDX69511	Canola	plasma membrane	64.5	23.96
CDX85543	Canola	extracellular, plasma membrane, vacuole	63.31	23.46
HORVU3Hr1G007580.2	Barley	extracellular	51.48	23.2
EER94687	Sorghum	extracellular	53.85	20.4
HORVU0Hr1G004650.3	Barley	mitochondrion	49.11	20.0
Os03t0416200-01	Rice	extracellular, golgi, plasma membrane	55.03	19.87
TraesCS5D01G107900.1	Wheat	extracellular	52.66	19.82
TraesCS5A01G095200.1	Wheat	extracellular	52.66	19.82
Zm00001d047276_P001	Maize	plasma membrane	52.66	19.78
TraesCS5B01G101400.1	Wheat	extracellular	52.66	19.78
GSMUA_Achr4P03210_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	52.07	19.69
GSMUA_Achr4P14440_001	Banana	plasma membrane	52.66	19.43
CDY70289	Canola	extracellular	44.97	19.14
Os07t0604400-00	Rice	extracellular	50.89	19.07
EER99679	Sorghum	plasma membrane	50.3	19.06
HORVU2Hr1G033060.13	Barley	mitochondrion	50.3	19.02
TraesCS2A01G175000.1	Wheat	plasma membrane	50.3	18.93
TraesCS2D01G182400.1	Wheat	plasma membrane	49.7	18.79
Zm00001d022082_P001	Maize	extracellular, plasma membrane, vacuole	49.7	18.79
TraesCS2B01G201400.1	Wheat	plasma membrane	49.7	18.75
CDY31063	Canola	plasma membrane	45.56	17.74
CDX86358	Canola	extracellular	44.38	17.2
CDY43250	Canola	plasma membrane	46.15	17.07
CDY60470	Canola	plasma membrane	46.15	17.03
CDX85277	Canola	extracellular	43.79	16.97
CDY20671	Canola	extracellular, plasma membrane, vacuole	44.97	16.7
CDY02184	Canola	plasma membrane	44.97	16.63
CDX93481	Canola	plasma membrane	43.2	16.63
CDY58691	Canola	plasma membrane	44.97	16.59
CDX87193	Canola	plasma membrane	44.38	16.45
CDY16831	Canola	plasma membrane	44.38	16.38
CDY57659	Canola	cytosol	12.43	13.73
CDX94950	Canola	nucleus	43.2	12.81
CDX70627	Canola	cytosol, nucleus, plasma membrane	62.72	12.35
CDY19626	Canola	mitochondrion	20.12	8.25
CDY09102	Canola	cytosol	9.47	6.13
CDX89278	Canola	extracellular, golgi, vacuole	21.3	5.43
CDY29275	Canola	extracellular, plasma membrane, vacuole	21.3	5.41
CDY36030	Canola	vacuole	20.71	5.4
CDY49611	Canola	plasma membrane	20.71	5.29
CDY00037	Canola	plasma membrane	20.71	5.29
CDX97377	Canola	endoplasmic reticulum, golgi, vacuole	20.71	5.26
CDY52722	Canola	endoplasmic reticulum, plasma membrane, vacuole	20.71	5.26
CDX82237	Canola	endoplasmic reticulum, vacuole	20.71	5.24
CDY14283	Canola	endoplasmic reticulum, plasma membrane, vacuole	20.71	5.12
CDY34980	Canola	endoplasmic reticulum, plasma membrane, vacuole	20.12	5.1
CDY32210	Canola	plasma membrane	18.93	4.85
CDY14723	Canola	cytosol	8.88	4.72
CDY34424	Canola	plasma membrane	18.34	4.7
CDY55591	Canola	plasma membrane	21.3	4.33
CDY43072	Canola	plasma membrane	21.3	4.26
CDY58695	Canola	extracellular	4.14	3.4
CDY02181	Canola	endoplasmic reticulum, extracellular	3.55	2.91
CDY24004	Canola	cytosol, nucleus, plastid	1.18	2.35
CDX87194	Canola	mitochondrion	2.37	1.91
CDY29033	Canola	cytosol	1.78	1.65
HORVU2Hr1G033080.1	Barley	extracellular	1.18	1.09
CDY66895	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY26445	EnsemblPlantsGene:GSBRNA2T00035239001	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31673	PANTHER:PTHR31673:SF19	ProteinID:CDY26445	ProteinID:CDY26445.1	SEG:seg	UniParc:UPI0004EDB954
UniProt:A0A078GIW9	MapMan:21.1.2.2	:	:	:	:

Description

BnaC09g42230DBnaC09g42230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIW9]

Coordinates

chrLK032190:-:192536..193181

Molecular Weight (calculated)

19875.2 Da

IEP (calculated)

9.679

GRAVY (calculated)

-0.327

Length

169 amino acids

Sequence
(BLAST)

001: MECYMYLLTV SSEKASKLLR LLLFFLQRHH NSLPFLCMWL REQKELRQAD PKILTKKGLN TARKDNAPLL QCTHHMCPVR VHWHVKVNYK DYWRVKIAIT
101: NFNYRMNHTL WTLAVQHPNL NNVTQVFSFD YKSVAPYGSI NDTGMFYGTK FYNDLLMEAG PSGNVQSEV

Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)

001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W

Arabidopsis Description

COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.