CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90983	Canola	extracellular	47.55	93.79
AT5G15630.1	Thale cress	extracellular, plasma membrane, vacuole	46.39	92.34
CDX69511	Canola	plasma membrane	47.44	89.45
CDX85543	Canola	extracellular, plasma membrane, vacuole	47.2	88.82
CDY26444	Canola	plastid	36.48	85.52
CDY66895	Canola	cytosol	5.59	84.21
KRH45086	Soybean	plasma membrane	40.56	80.74
KRH01361	Soybean	extracellular, plasma membrane, vacuole	40.56	80.74
KRG93686	Soybean	extracellular, plasma membrane, vacuole	40.21	80.05
PGSC0003DMT400082702	Potato	extracellular	23.08	79.84
KRH18350	Soybean	cytosol	16.55	79.78
VIT_14s0083g01150.t01	Wine grape	plasma membrane	39.98	79.58
PGSC0003DMT400003723	Potato	extracellular	39.74	78.57
PGSC0003DMT400002674	Potato	plasma membrane	39.16	77.42
CDY24004	Canola	cytosol, nucleus, plastid	6.76	68.24
CDY70289	Canola	extracellular	30.07	64.99
CDX86358	Canola	extracellular	32.98	64.91
CDX85277	Canola	extracellular	32.87	64.68
CDY26445	Canola	cytosol	12.35	62.72
CDY02184	Canola	plasma membrane	33.33	62.58
CDY58691	Canola	plasma membrane	33.22	62.23
CDX87193	Canola	plasma membrane	32.98	62.06
CDY16831	Canola	plasma membrane	32.87	61.57
CDY60470	Canola	plasma membrane	32.28	60.48
CDY43250	Canola	plasma membrane	32.17	60.39
CDY29033	Canola	cytosol	12.24	57.69
CDY42842	Canola	cytosol	7.93	55.74
CDY02181	Canola	endoplasmic reticulum, extracellular	13.05	54.37
CDY58695	Canola	extracellular	12.82	53.4
CDY31063	Canola	plasma membrane	24.36	48.16
CDX93481	Canola	plasma membrane	24.24	47.38
CDY20671	Canola	extracellular, plasma membrane, vacuole	24.13	45.49
CDY14723	Canola	cytosol	15.27	41.2
CDX94950	Canola	nucleus	22.96	34.56
CDX87194	Canola	mitochondrion	6.53	26.79
CDY57659	Canola	cytosol	4.55	25.49
CDY09102	Canola	cytosol	7.23	23.75
CDY19626	Canola	mitochondrion	10.72	22.33
CDY52722	Canola	endoplasmic reticulum, plasma membrane, vacuole	15.04	19.4
CDX89278	Canola	extracellular, golgi, vacuole	14.8	19.16
CDY34980	Canola	endoplasmic reticulum, plasma membrane, vacuole	14.69	18.89
CDY36030	Canola	vacuole	14.22	18.83
CDX97377	Canola	endoplasmic reticulum, golgi, vacuole	14.57	18.8
CDY34424	Canola	plasma membrane	14.34	18.66
CDY29275	Canola	extracellular, plasma membrane, vacuole	14.45	18.65
CDY32210	Canola	plasma membrane	14.34	18.64
CDY49611	Canola	plasma membrane	14.34	18.58
CDX82237	Canola	endoplasmic reticulum, vacuole	14.45	18.56
CDY00037	Canola	plasma membrane	14.22	18.43
CDY14283	Canola	endoplasmic reticulum, plasma membrane, vacuole	14.57	18.3
CDY55591	Canola	plasma membrane	14.92	15.38
CDY43072	Canola	plasma membrane	14.8	15.03

Protein Annotations

MapMan:21.1.2.2	GO:A0A078C1L1	EnsemblPlants:CDX70627	ProteinID:CDX70627	ProteinID:CDX70627.1	InterPro:COBRA_pln
InterPro:F-box-assoc_interact_dom	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020
GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	EnsemblPlantsGene:GSBRNA2T00140476001	PFAM:PD140986
PFAM:PF04833	PANTHER:PTHR31673	PANTHER:PTHR31673:SF2	TIGRFAMs:TIGR01640	UniParc:UPI0004EEA67A	SEG:seg

Description

BnaC03g07110D

Coordinates

chrLK031791:+:1301837..1306394

Molecular Weight (calculated)

97019.4 Da

IEP (calculated)

8.860

GRAVY (calculated)

-0.155

Length

858 amino acids

Sequence
(BLAST)

001: MANLPMDIVN DLCFSLIDSS DFVASHLKRT LETEEHLMIL LRSPRLLRTV YLDAPDKLSD VDHPLQTGGF TEVFGSVNGL IGLTNSPVDL AIFNPSSRKI
101: HRLPIEPIDF SERFIARENV FYGLGYDSVS DDYKVVRMVQ STHKGDGVVE SFGRAFEIKV FSLKSNKWKR ILLLFEVQIL FIKLYYRLLY RRGNGVLASN
201: SLHWILPRSR GYIAYNTVIR FDLASDDLGI LRYPLELLHE DDMDIGVLDG CLCLMCYSES SHVGVWILRE YEGKWSKFIT VPKPETVVSF EFVRPMIYSK
301: DRSKILLEIN NGKLMWFDLE SKGFETLGIK GCEGPCNAEI VVSSLVLGCK GDPRRAQEKK MMLEGNKRYD KTVRESESWG GWFSVQGIQA EVMSKAEELS
401: KPKPLPRRER KWLKGNFIKF VLEIYRKMRL CFCFFLMIIF SASAYDPLDP NGNITIKWDI MSWTADGYVA TVTMNNFQTY RHIQSPGWTL GWAWAKKEVI
501: WSMVGAQATE QGDCSKFKGN VPHCCKKTPT VVDLLPGVPY NQQISNCCKG GVVGAWGQDP SSAVSQFQVS VGLAGTTNKT VKLPKNFTLL GPGPGYTCGP
601: AKIVPSTVFL TTDKRRKTQA LMTWNVTCTY SQFLARKHPS CCVSFSSFYN DTITPCPSCA CGCENKRSCV KADSKILTKK GLNTPRKDNA PLLQCTHHMC
701: PIRVHWHVKT NYKDYWRVKI AITNFNYRMN HTLWTLAVQH PNLNNVTQVF SFDYKSVAPY GSINDTGMFF GTKFYNDLLM EAGPSGNVQS EVLLQKDQKT
801: FTFKQGWAFP RKVYFNGDEC MLPPPDSYPF LPNSARGSLA SLSTLSLTIL VLVLISVG

Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)

001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W

Arabidopsis Description

COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.