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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 6
  • golgi 5
  • plasma membrane 7
  • endoplasmic reticulum 5
  • vacuole 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019992.1-P Field mustard cytosol 85.19 94.21
AT1G09790.1 Thale cress plasma membrane 84.28 81.5
CDY31063 Canola plasma membrane 79.73 80.65
CDY20671 Canola extracellular, plasma membrane, vacuole 79.95 77.14
CDX94950 Canola nucleus 86.33 66.49
Solyc01g103860.2.1 Tomato cytosol 54.67 56.74
VIT_12s0035g00630.t01 Wine grape extracellular, plasma membrane 54.21 55.22
GSMUA_Achr4P27070_001 Banana cytosol 51.48 54.59
CDY42842 Canola cytosol 14.58 52.46
CDY66895 Canola cytosol 6.61 50.88
CDX85277 Canola extracellular 50.34 50.69
CDX86358 Canola extracellular 50.34 50.69
Zm00001d002803_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 49.2 49.54
CDY70289 Canola extracellular 44.65 49.37
KXG26803 Sorghum extracellular, plasma membrane 50.11 49.22
TraesCS2D01G386400.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 49.2 48.87
TraesCS2A01G388600.1 Wheat extracellular, plasma membrane 41.46 48.79
Os04t0540300-00 Rice plasma membrane 48.06 48.06
CDX90983 Canola extracellular 47.61 48.05
CDY43250 Canola plasma membrane 49.43 47.48
CDY16831 Canola plasma membrane 49.43 47.38
CDY60470 Canola plasma membrane 49.43 47.38
CDY02184 Canola plasma membrane 49.2 47.26
CDX87193 Canola plasma membrane 48.97 47.15
CDY24004 Canola cytosol, nucleus, plastid 9.11 47.06
CDY58691 Canola plasma membrane 48.97 46.94
TraesCS6A01G158000.1 Wheat endoplasmic reticulum 36.67 46.26
TraesCS6B01G361700.1 Wheat plastid 23.23 46.15
TraesCS6A01G330900.1 Wheat extracellular, plasma membrane 43.74 46.15
CDY26444 Canola plastid 38.27 45.9
CDX85543 Canola extracellular, plasma membrane, vacuole 47.38 45.61
CDX69511 Canola plasma membrane 47.15 45.49
TraesCS6B01G185800.1 Wheat cytosol, mitochondrion, nucleus, plastid 42.6 45.06
CDY26445 Canola cytosol 16.63 43.2
TraesCS2B01G406700.1 Wheat endoplasmic reticulum, golgi, plasma membrane 39.64 40.56
CDY58695 Canola extracellular 18.45 39.32
CDY02181 Canola endoplasmic reticulum, extracellular 18.45 39.32
CDY29033 Canola cytosol 15.95 38.46
CDY14723 Canola cytosol 20.73 28.62
HORVU2Hr1G092510.1 Barley mitochondrion 20.5 28.12
CDX70627 Canola cytosol, nucleus, plasma membrane 47.38 24.24
CDY57659 Canola cytosol 7.74 22.22
CDX87194 Canola mitochondrion 10.25 21.53
CDY19626 Canola mitochondrion 19.59 20.87
CDY09102 Canola cytosol 12.3 20.69
CDY00037 Canola plasma membrane 28.47 18.88
CDY32210 Canola plasma membrane 28.25 18.79
CDY49611 Canola plasma membrane 28.25 18.73
CDY34424 Canola plasma membrane 27.79 18.51
CDY52722 Canola endoplasmic reticulum, plasma membrane, vacuole 27.79 18.35
CDY34980 Canola endoplasmic reticulum, plasma membrane, vacuole 26.88 17.69
CDY36030 Canola vacuole 25.74 17.44
CDX82237 Canola endoplasmic reticulum, vacuole 26.2 17.22
CDY29275 Canola extracellular, plasma membrane, vacuole 25.51 16.84
CDX97377 Canola endoplasmic reticulum, golgi, vacuole 25.28 16.69
CDX89278 Canola extracellular, golgi, vacuole 25.06 16.59
CDY14283 Canola endoplasmic reticulum, plasma membrane, vacuole 25.28 16.25
CDY55591 Canola plasma membrane 27.11 14.3
CDY43072 Canola plasma membrane 26.88 13.96
Protein Annotations
MapMan:21.1.2.2GO:A0A078DVZ6EnsemblPlants:CDX93481ProteinID:CDX93481ProteinID:CDX93481.1InterPro:COBRA_pln
GO:GO:0005575GO:GO:0008150GO:GO:0009987GO:GO:0010215GO:GO:0016020GO:GO:0016043
GO:GO:0016049GO:GO:0031225GO:GO:0040007EnsemblPlantsGene:GSBRNA2T00156150001PFAM:PD140986PFAM:PF04833
PIRSF:PIRSF038122PANTHER:PTHR31673PANTHER:PTHR31673:SF12SignalP:SignalP-noTMUniParc:UPI0004EEB340SEG:seg
Description
BnaA06g05670D
Coordinates
chrLK031876:+:382435..384821
Molecular Weight (calculated)
49378.8 Da
IEP (calculated)
7.327
GRAVY (calculated)
-0.226
Length
439 amino acids
Sequence
(BLAST)
001: MGATLNLVYA VTIILFTISS TSHGYDPLDP FGKITIKWDL LLSSPGHHTV QVKLENMQEY RHIDKPGWKL SWHWESKQVI WDMRGAETTE QGNCSAFASS
101: GTLPHCCLRR PTIVDLLPGS PFNSQVSNCC RGGVLTSMSQ DHTNHVSVFH MTIGSFPDDS GEFTMPSNFD IGVPGYSCDN ATSVAPTKYS TDKGRRKTQA
201: LATWEAVCVY SQFRSSQTPK CCVSLSAFYY RNIVPCPTCS CGCSSSHCVK PGEMPPYLEQ KHDPEEEVPP VVECTKHMCP IHIHWHVKVN YREYWRVKIT
301: ATNLNTMKNY TDWNLVVLHP NLKSVEQVFS FNYKSLTPYH NGINDTGMFW GVKFYNDVLL QAGKIGNVQT ELLLKKDMGN FSFREGWAFP RRILFNGDEC
401: VMPSPDDYPR LPGYASSSSS SAASSFVTIV FCFLLLLFV
Best Arabidopsis Sequence Match ( AT1G09790.2 )
(BLAST)
001: MGAMLNLLLV VTVILCSILS PTHGYDPLDP FGKIIIKWDL LLSSPGQHHV QVTLENMQEY RHVEKPGWKL SWHWLNQEVI WDMKGAETTE QGNCSAFASS
101: GNLPHCCLER PTIVDLLPGA SLNVQVANCC RGGVLTSMSQ DHANHVSAFH MTVGSSPDGP EEFNMPSNFD IGVPGYSCDN ATSVSPTKFS TDKGRRKTQA
201: LATWEAVCVY SQFRSSPSPK CCVSLSAFYY QNIVPCPTCS CGCSSSHCVK DGELPPYLEQ KHDPDEEVSP VVKCSDHMCP IRIHWHVKVN YREYWRVKIT
301: ATNFNTMKNY TNWNLVVLHP NLKSVQQVFS FNYKSLTPYQ NSINDTGMFW GVQFYNDVLL QEGKIGNVQT ELLLKKDMGN FTFREGWAFP RRILFNGDEC
401: VMPSPDDFPR LPKSAHSSSS SSAVISSVSV VFCFLLHHLL LLV
Arabidopsis Description
COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.