Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G388600.1 | Wheat | extracellular, plasma membrane | 80.77 | 95.71 |
| TraesCS2B01G406700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 77.83 | 80.19 |
| Os04t0540300-00 | Rice | plasma membrane | 65.38 | 65.83 |
| KXG26803 | Sorghum | extracellular, plasma membrane | 62.67 | 61.97 |
| Zm00001d002803_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 60.86 | 61.7 |
| GSMUA_Achr4P27070_001 | Banana | cytosol | 55.66 | 59.42 |
| Solyc01g103860.2.1 | Tomato | cytosol | 50.23 | 52.48 |
| VIT_12s0035g00630.t01 | Wine grape | extracellular, plasma membrane | 50.45 | 51.74 |
| Bra030800.1-P | Field mustard | cytosol | 47.29 | 50.12 |
| CDX93481 | Canola | plasma membrane | 48.87 | 49.2 |
| HORVU2Hr1G092510.1 | Barley | mitochondrion | 35.29 | 48.75 |
| Bra019992.1-P | Field mustard | cytosol | 43.44 | 48.36 |
| CDY31063 | Canola | plasma membrane | 47.06 | 47.93 |
| AT1G09790.1 | Thale cress | plasma membrane | 48.64 | 47.36 |
| CDY20671 | Canola | extracellular, plasma membrane, vacuole | 48.19 | 46.81 |
| TraesCS6D01G364400.1 | Wheat | extracellular | 47.29 | 46.76 |
| TraesCS2D01G182500.1 | Wheat | golgi | 47.29 | 45.93 |
| TraesCS5D01G107900.1 | Wheat | extracellular | 45.93 | 45.21 |
| TraesCS3D01G047900.1 | Wheat | plastid | 25.11 | 44.58 |
| TraesCS5D01G401900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 45.02 | 43.54 |
| TraesCS2D01G182400.1 | Wheat | plasma membrane | 43.89 | 43.4 |
| TraesCS4D01G082700.1 | Wheat | extracellular | 45.02 | 43.17 |
| TraesCS3D01G404800.2 | Wheat | plasma membrane | 40.95 | 39.61 |
| CDX94950 | Canola | nucleus | 44.8 | 34.74 |
| TraesCS5D01G402000.1 | Wheat | extracellular | 17.19 | 33.33 |
| TraesCS2D01G092100.1 | Wheat | plasma membrane | 23.76 | 15.91 |
| TraesCS4D01G188600.1 | Wheat | golgi | 23.08 | 15.16 |
| TraesCS7D01G136500.1 | Wheat | mitochondrion | 22.4 | 14.69 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G386400.1 | EnsemblPlantsGene:TraesCS2D01G386400 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 | InterPro:COBRA_pln |
| PANTHER:PTHR31673 | PANTHER:PTHR31673:SF12 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 | SignalP:SignalP-noTM |
| MapMan:21.1.2.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:491499014..491500969
Molecular Weight (calculated)
49406.4 Da
IEP (calculated)
6.358
GRAVY (calculated)
-0.238
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEQFVLFI FICCLSSQFA DGYDPVDPNG NITINWDFPS IEPNVYAVKV SIHNYQLYRH IERPGWRLSW VWAGDEFISD VIGAETTERG NCTGRHGANG
101: APPHCCEKQP VMADLLPGAP YNRQSANCCR GGVLSSVTQN NRTATSQFDM YIVNFALDEH GDPKMPTTFS IGVPGYTCSN ATNVPATRSK VDEQRHVQVL
201: RTWQIICSYS QFRDAPSPSC CVSLTTFYNN TIVGCPRDSC GGANSPSAHQ CLSGGEQSKV LAALPDAEGA PPVPVIRCTE HMCPIRVHWH VKQSYRGYWR
301: VKTTVTNYDV VSNYTDWNLV VQHPNLRSLT QLFSFNYQPL IQYGTINDTG MFWGIKNYNE MLLGDGNVQT EMILEKDPSD FTFSGGWAFP RRVYFNGHEC
401: VMPPPDQYPS LPNAAWDVRV SAVQRWLVAS SCVLSLSMLF LV
101: APPHCCEKQP VMADLLPGAP YNRQSANCCR GGVLSSVTQN NRTATSQFDM YIVNFALDEH GDPKMPTTFS IGVPGYTCSN ATNVPATRSK VDEQRHVQVL
201: RTWQIICSYS QFRDAPSPSC CVSLTTFYNN TIVGCPRDSC GGANSPSAHQ CLSGGEQSKV LAALPDAEGA PPVPVIRCTE HMCPIRVHWH VKQSYRGYWR
301: VKTTVTNYDV VSNYTDWNLV VQHPNLRSLT QLFSFNYQPL IQYGTINDTG MFWGIKNYNE MLLGDGNVQT EMILEKDPSD FTFSGGWAFP RRVYFNGHEC
401: VMPPPDQYPS LPNAAWDVRV SAVQRWLVAS SCVLSLSMLF LV
001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV
Arabidopsis Description
COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.