Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G388600.1 | Wheat | extracellular, plasma membrane | 50.72 | 56.3 |
| TraesCS2D01G386400.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 59.42 | 55.66 |
| VIT_12s0035g00630.t01 | Wine grape | extracellular, plasma membrane | 57.0 | 54.76 |
| Os04t0540300-00 | Rice | plasma membrane | 57.73 | 54.44 |
| Solyc01g103860.2.1 | Tomato | cytosol | 55.56 | 54.37 |
| Zm00001d002803_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 57.25 | 54.36 |
| KXG26803 | Sorghum | extracellular, plasma membrane | 56.76 | 52.57 |
| Bra030800.1-P | Field mustard | cytosol | 52.66 | 52.28 |
| Bra019992.1-P | Field mustard | cytosol | 50.0 | 52.14 |
| CDX93481 | Canola | plasma membrane | 54.59 | 51.48 |
| TraesCS6A01G330900.1 | Wheat | extracellular, plasma membrane | 51.21 | 50.96 |
| CDY31063 | Canola | plasma membrane | 52.9 | 50.46 |
| GSMUA_Achr4P01440_001 | Banana | extracellular, plasma membrane | 55.56 | 50.33 |
| GSMUA_Achr1P24500_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 55.56 | 50.22 |
| AT1G09790.1 | Thale cress | plasma membrane | 54.35 | 49.56 |
| TraesCS6B01G185800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 49.52 | 49.4 |
| TraesCS6B01G361700.1 | Wheat | plastid | 26.33 | 49.32 |
| TraesCS6A01G158000.1 | Wheat | endoplasmic reticulum | 41.3 | 49.14 |
| GSMUA_Achr2P06240_001 | Banana | mitochondrion | 56.28 | 48.85 |
| CDY20671 | Canola | extracellular, plasma membrane, vacuole | 53.38 | 48.57 |
| GSMUA_Achr4P03210_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 51.93 | 48.1 |
| TraesCS2B01G406700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 49.03 | 47.32 |
| GSMUA_Achr4P14440_001 | Banana | plasma membrane | 51.93 | 46.94 |
| CDX94950 | Canola | nucleus | 51.69 | 37.54 |
| HORVU2Hr1G092510.1 | Barley | mitochondrion | 22.71 | 29.38 |
| GSMUA_Achr8P10390_001 | Banana | cytosol | 11.84 | 19.6 |
| GSMUA_Achr4P33540_001 | Banana | vacuole | 26.81 | 16.69 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 26.33 | 16.34 |
| GSMUA_Achr3P21560_001 | Banana | plasma membrane | 25.85 | 16.31 |
| GSMUA_Achr11P... | Banana | plasma membrane | 25.6 | 15.68 |
Protein Annotations
| MapMan:21.1.2.2 | InterPro:COBRA_pln | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 |
| EnsemblPlantsGene:GSMUA_Achr4G27070_001 | EnsemblPlants:GSMUA_Achr4P27070_001 | EnsemblPlants:GSMUA_Achr4T27070_001 | UniProt:M0SSG9 | PFAM:PD140986 | PFAM:PF04833 |
| PIRSF:PIRSF038122 | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF12 | TMHMM:TMhelix | UniParc:UPI000295A187 | SEG:seg |
Description
COBRA-like protein 7 [Source:GMGC_GENE;Acc:GSMUA_Achr4G27070_001]
Coordinates
chr4:+:26057032..26059527
Molecular Weight (calculated)
46528.4 Da
IEP (calculated)
6.327
GRAVY (calculated)
-0.204
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MCCCLDAYDP MDPDGNITIK WDFMTNSGDM YMVSVSIYNY QLYRHIERPG WRLGWTWPND EVIWDMRGAE TTNQGNCSKF KGDNIPHCCE KSPTIVDLLP
101: GTPYNMQTKN CCRGGVLSSL TQDRTLAMAS FQMSMESANI SSPATGKPSN FTLGIPGYTC SNATVVAPSK FQFDKQRTTQ ALMTWEITCS FSQFRESATP
201: SCCVSLSTFY NSTIVSCPRC SCGDGEQSNF LRLPNGDGGS TTSPAVLCTP HMCPIRVHWH VKESYREYWR VKVTITNFNM YSNYSDWNLV IQHPNFRSIL
301: QIFSFNYLPL VQYGEINDTA MFWGIKHYND MLIQCGENGN VQTEMLLHKD AADFTFGGGW AFPRRLSFNG HDCVMPPPDS YPTMPNGSST LSSLVHCVSL
401: VLSSFLLSVV LLLL
101: GTPYNMQTKN CCRGGVLSSL TQDRTLAMAS FQMSMESANI SSPATGKPSN FTLGIPGYTC SNATVVAPSK FQFDKQRTTQ ALMTWEITCS FSQFRESATP
201: SCCVSLSTFY NSTIVSCPRC SCGDGEQSNF LRLPNGDGGS TTSPAVLCTP HMCPIRVHWH VKESYREYWR VKVTITNFNM YSNYSDWNLV IQHPNFRSIL
301: QIFSFNYLPL VQYGEINDTA MFWGIKHYND MLIQCGENGN VQTEMLLHKD AADFTFGGGW AFPRRLSFNG HDCVMPPPDS YPTMPNGSST LSSLVHCVSL
401: VLSSFLLSVV LLLL
001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL
Arabidopsis Description
COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.