Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93481 | Canola | plasma membrane | 81.5 | 84.28 |
| Bra019992.1-P | Field mustard | cytosol | 70.93 | 81.11 |
| CDY31063 | Canola | plasma membrane | 73.57 | 76.96 |
| Bra030800.1-P | Field mustard | cytosol | 70.48 | 76.74 |
| CDY20671 | Canola | extracellular, plasma membrane, vacuole | 74.01 | 73.85 |
| CDX94950 | Canola | nucleus | 74.23 | 59.12 |
| Solyc01g103860.2.1 | Tomato | cytosol | 52.42 | 56.26 |
| VIT_12s0035g00630.t01 | Wine grape | extracellular, plasma membrane | 52.86 | 55.68 |
| GSMUA_Achr4P27070_001 | Banana | cytosol | 49.56 | 54.35 |
| KXG26803 | Sorghum | extracellular, plasma membrane | 49.12 | 49.89 |
| Zm00001d002803_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 47.8 | 49.77 |
| Os04t0540300-00 | Rice | plasma membrane | 47.58 | 49.2 |
| TraesCS2A01G388600.1 | Wheat | extracellular, plasma membrane | 40.31 | 49.06 |
| AT5G60920.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 48.9 | 48.68 |
| TraesCS2D01G386400.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 47.36 | 48.64 |
| AT3G02210.1 | Thale cress | extracellular | 48.02 | 48.23 |
| AT3G29810.1 | Thale cress | extracellular | 46.48 | 47.85 |
| TraesCS6A01G158000.1 | Wheat | endoplasmic reticulum | 36.34 | 47.41 |
| AT5G15630.1 | Thale cress | extracellular, plasma membrane, vacuole | 44.71 | 47.1 |
| TraesCS6A01G330900.1 | Wheat | extracellular, plasma membrane | 42.95 | 46.88 |
| TraesCS6B01G361700.1 | Wheat | plastid | 22.47 | 46.15 |
| TraesCS6B01G185800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 41.63 | 45.54 |
| TraesCS2B01G406700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 39.21 | 41.49 |
| AT5G60950.1 | Thale cress | endoplasmic reticulum | 18.5 | 41.18 |
| HORVU2Hr1G092510.1 | Barley | mitochondrion | 19.38 | 27.5 |
| AT4G16120.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 27.75 | 19.06 |
| AT5G49270.1 | Thale cress | extracellular, plasma membrane, vacuole | 26.87 | 18.4 |
| AT3G16860.1 | Thale cress | plasma membrane | 25.77 | 17.92 |
| AT3G20580.1 | Thale cress | endoplasmic reticulum, vacuole | 25.11 | 16.96 |
| AT4G27110.1 | Thale cress | extracellular | 24.89 | 16.92 |
Protein Annotations
| MapMan:21.1.2.2 | EntrezGene:837508 | ProteinID:AAB60732.1 | ProteinID:AEE28492.1 | ArrayExpress:AT1G09790 | EnsemblPlantsGene:AT1G09790 |
| RefSeq:AT1G09790 | TAIR:AT1G09790 | RefSeq:AT1G09790-TAIR-G | EnsemblPlants:AT1G09790.1 | TAIR:AT1G09790.1 | Unigene:At.42212 |
| Symbol:COBL6 | InterPro:COBRA_pln | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0010215 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 |
| GO:GO:0040007 | RefSeq:NP_172450.2 | UniProt:O04500 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020094 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR31673 | PANTHER:PTHR31673:SF12 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0000196BEE | SEG:seg |
Description
COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
Coordinates
chr1:-:3168482..3170819
Molecular Weight (calculated)
50957.0 Da
IEP (calculated)
6.836
GRAVY (calculated)
-0.142
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.