Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 2
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_12s0035g00630.t01 | Wine grape | extracellular, plasma membrane | 61.23 | 60.09 |
Bra030800.1-P | Field mustard | cytosol | 56.74 | 57.55 |
GSMUA_Achr4P27070_001 | Banana | cytosol | 54.37 | 55.56 |
Bra019992.1-P | Field mustard | cytosol | 52.01 | 55.42 |
CDX93481 | Canola | plasma membrane | 56.74 | 54.67 |
CDY31063 | Canola | plasma membrane | 56.03 | 54.61 |
AT1G09790.1 | Thale cress | plasma membrane | 56.26 | 52.42 |
CDY20671 | Canola | extracellular, plasma membrane, vacuole | 55.08 | 51.21 |
Zm00001d002803_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 52.01 | 50.46 |
TraesCS2A01G388600.1 | Wheat | extracellular, plasma membrane | 44.44 | 50.4 |
Solyc03g070440.2.1 | Tomato | extracellular | 51.3 | 50.35 |
Solyc02g089120.2.1 | Tomato | extracellular | 53.19 | 50.34 |
TraesCS2D01G386400.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 52.48 | 50.23 |
Solyc02g089130.2.1 | Tomato | extracellular | 51.3 | 50.0 |
Os04t0540300-00 | Rice | plasma membrane | 51.77 | 49.89 |
Solyc02g065770.2.1 | Tomato | extracellular | 52.25 | 49.77 |
KXG26803 | Sorghum | extracellular, plasma membrane | 50.83 | 48.1 |
Solyc03g114890.2.1 | Tomato | extracellular | 45.15 | 47.63 |
Solyc03g114900.2.1 | Tomato | extracellular | 49.88 | 47.2 |
Solyc03g114910.2.1 | Tomato | extracellular, plasma membrane, vacuole | 50.83 | 46.94 |
TraesCS6A01G330900.1 | Wheat | extracellular, plasma membrane | 45.39 | 46.15 |
TraesCS6B01G185800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 44.92 | 45.78 |
TraesCS6B01G361700.1 | Wheat | plastid | 23.88 | 45.7 |
TraesCS6A01G158000.1 | Wheat | endoplasmic reticulum | 37.59 | 45.69 |
TraesCS2B01G406700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 42.79 | 42.19 |
Solyc03g070460.1.1 | Tomato | cytosol | 11.35 | 41.38 |
CDX94950 | Canola | nucleus | 54.37 | 40.35 |
Solyc01g111050.2.1 | Tomato | cytosol | 40.9 | 36.89 |
Solyc03g114880.1.1 | Tomato | cytosol, extracellular, vacuole | 27.19 | 36.05 |
Solyc02g064790.1.1 | Tomato | extracellular, vacuole | 5.67 | 34.78 |
HORVU2Hr1G092510.1 | Barley | mitochondrion | 21.99 | 29.06 |
Solyc03g070450.1.1 | Tomato | extracellular, vacuole | 14.66 | 28.84 |
Solyc02g080250.1.1 | Tomato | cytosol | 17.49 | 21.64 |
Solyc01g065530.2.1 | Tomato | nucleus, plastid | 28.13 | 18.36 |
Solyc09g075540.1.1 | Tomato | plasma membrane | 27.66 | 17.94 |
Solyc10g006450.2.1 | Tomato | golgi, plasma membrane, vacuole | 26.95 | 16.99 |
Solyc07g064200.2.1 | Tomato | extracellular, golgi, vacuole | 20.8 | 14.31 |
Solyc02g080240.1.1 | Tomato | extracellular | 11.58 | 12.73 |
Protein Annotations
EnsemblPlants:Solyc01g103860.2.1 | EnsemblPlantsGene:Solyc01g103860.2 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 |
InterPro:COBRA_pln | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF12 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 |
TMHMM:TMhelix | UniParc:UPI00027685F1 | UniProt:K4B1W1 | MapMan:21.1.2.2 | : | : |
Description
No Description!
Coordinates
chr1:+:92372559..92375062
Molecular Weight (calculated)
47877.5 Da
IEP (calculated)
6.757
GRAVY (calculated)
-0.155
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MINFSYDADG YDPMDPMGNI TIRWDVTTST ENNHHIRVSI FNYQLFRHVE QPGWKLSWDW HGKEVIWQMW GAETTEQGDC SAIKGDTLPH CCLKEPVILD
101: LLPGAPYNKQ VANCCKGGVL TSLTQDPEKY VSSFEMIIAS ASNDGSGPRM PENFTLGIPG YTCGVAVKVP PTKFHEDQGR RQTQAVATWD VICSYSQFRA
201: SSSPACCVSL SAFYSETIVP CSVCSCGCQG QRGAAQCVKR GEVPPVLQLG HNELPTPILE CTRHMCPIQV HWHVKQSYRE YWRVKMTIRN LNLVRNYSQW
301: NLVVLHPNLR SITQVFSFDY KPLDQYGDIN DTGMFYGIKY YNDMLLQAGR SGVVQSELLL HKDAGIFTFN EGWMFPRKIS FNGYECVLPS PDKYPMLPNI
401: SQFLAPPILI IIVFSFCLIL TIF
101: LLPGAPYNKQ VANCCKGGVL TSLTQDPEKY VSSFEMIIAS ASNDGSGPRM PENFTLGIPG YTCGVAVKVP PTKFHEDQGR RQTQAVATWD VICSYSQFRA
201: SSSPACCVSL SAFYSETIVP CSVCSCGCQG QRGAAQCVKR GEVPPVLQLG HNELPTPILE CTRHMCPIQV HWHVKQSYRE YWRVKMTIRN LNLVRNYSQW
301: NLVVLHPNLR SITQVFSFDY KPLDQYGDIN DTGMFYGIKY YNDMLLQAGR SGVVQSELLL HKDAGIFTFN EGWMFPRKIS FNGYECVLPS PDKYPMLPNI
401: SQFLAPPILI IIVFSFCLIL TIF
001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV
Arabidopsis Description
COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.