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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plasma membrane 2
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_12s0035g00630.t01 Wine grape extracellular, plasma membrane 61.23 60.09
Bra030800.1-P Field mustard cytosol 56.74 57.55
GSMUA_Achr4P27070_001 Banana cytosol 54.37 55.56
Bra019992.1-P Field mustard cytosol 52.01 55.42
CDX93481 Canola plasma membrane 56.74 54.67
CDY31063 Canola plasma membrane 56.03 54.61
AT1G09790.1 Thale cress plasma membrane 56.26 52.42
CDY20671 Canola extracellular, plasma membrane, vacuole 55.08 51.21
Zm00001d002803_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 52.01 50.46
TraesCS2A01G388600.1 Wheat extracellular, plasma membrane 44.44 50.4
Solyc03g070440.2.1 Tomato extracellular 51.3 50.35
Solyc02g089120.2.1 Tomato extracellular 53.19 50.34
TraesCS2D01G386400.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 52.48 50.23
Solyc02g089130.2.1 Tomato extracellular 51.3 50.0
Os04t0540300-00 Rice plasma membrane 51.77 49.89
Solyc02g065770.2.1 Tomato extracellular 52.25 49.77
KXG26803 Sorghum extracellular, plasma membrane 50.83 48.1
Solyc03g114890.2.1 Tomato extracellular 45.15 47.63
Solyc03g114900.2.1 Tomato extracellular 49.88 47.2
Solyc03g114910.2.1 Tomato extracellular, plasma membrane, vacuole 50.83 46.94
TraesCS6A01G330900.1 Wheat extracellular, plasma membrane 45.39 46.15
TraesCS6B01G185800.1 Wheat cytosol, mitochondrion, nucleus, plastid 44.92 45.78
TraesCS6B01G361700.1 Wheat plastid 23.88 45.7
TraesCS6A01G158000.1 Wheat endoplasmic reticulum 37.59 45.69
TraesCS2B01G406700.1 Wheat endoplasmic reticulum, golgi, plasma membrane 42.79 42.19
Solyc03g070460.1.1 Tomato cytosol 11.35 41.38
CDX94950 Canola nucleus 54.37 40.35
Solyc01g111050.2.1 Tomato cytosol 40.9 36.89
Solyc03g114880.1.1 Tomato cytosol, extracellular, vacuole 27.19 36.05
Solyc02g064790.1.1 Tomato extracellular, vacuole 5.67 34.78
HORVU2Hr1G092510.1 Barley mitochondrion 21.99 29.06
Solyc03g070450.1.1 Tomato extracellular, vacuole 14.66 28.84
Solyc02g080250.1.1 Tomato cytosol 17.49 21.64
Solyc01g065530.2.1 Tomato nucleus, plastid 28.13 18.36
Solyc09g075540.1.1 Tomato plasma membrane 27.66 17.94
Solyc10g006450.2.1 Tomato golgi, plasma membrane, vacuole 26.95 16.99
Solyc07g064200.2.1 Tomato extracellular, golgi, vacuole 20.8 14.31
Solyc02g080240.1.1 Tomato extracellular 11.58 12.73
Protein Annotations
EnsemblPlants:Solyc01g103860.2.1EnsemblPlantsGene:Solyc01g103860.2GO:GO:0005575GO:GO:0008150GO:GO:0009987GO:GO:0010215
GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0016049GO:GO:0031225GO:GO:0040007
InterPro:COBRA_plnPANTHER:PTHR31673PANTHER:PTHR31673:SF12PFAM:PD140986PFAM:PF04833PIRSF:PIRSF038122
TMHMM:TMhelixUniParc:UPI00027685F1UniProt:K4B1W1MapMan:21.1.2.2::
Description
No Description!
Coordinates
chr1:+:92372559..92375062
Molecular Weight (calculated)
47877.5 Da
IEP (calculated)
6.757
GRAVY (calculated)
-0.155
Length
423 amino acids
Sequence
(BLAST)
001: MINFSYDADG YDPMDPMGNI TIRWDVTTST ENNHHIRVSI FNYQLFRHVE QPGWKLSWDW HGKEVIWQMW GAETTEQGDC SAIKGDTLPH CCLKEPVILD
101: LLPGAPYNKQ VANCCKGGVL TSLTQDPEKY VSSFEMIIAS ASNDGSGPRM PENFTLGIPG YTCGVAVKVP PTKFHEDQGR RQTQAVATWD VICSYSQFRA
201: SSSPACCVSL SAFYSETIVP CSVCSCGCQG QRGAAQCVKR GEVPPVLQLG HNELPTPILE CTRHMCPIQV HWHVKQSYRE YWRVKMTIRN LNLVRNYSQW
301: NLVVLHPNLR SITQVFSFDY KPLDQYGDIN DTGMFYGIKY YNDMLLQAGR SGVVQSELLL HKDAGIFTFN EGWMFPRKIS FNGYECVLPS PDKYPMLPNI
401: SQFLAPPILI IIVFSFCLIL TIF
Best Arabidopsis Sequence Match ( AT1G09790.1 )
(BLAST)
001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV
Arabidopsis Description
COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.