Factsheet for Bra030800.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31063	Canola	plasma membrane	96.4	92.63
Bra019992.1-P	Field mustard	cytosol	73.14	76.83
AT1G09790.1	Thale cress	plasma membrane	76.74	70.48
Solyc01g103860.2.1	Tomato	cytosol	57.55	56.74
VIT_12s0035g00630.t01	Wine grape	extracellular, plasma membrane	54.92	53.13
Bra029346.1-P	Field mustard	cytosol, plasma membrane, plastid	15.59	52.85
GSMUA_Achr4P27070_001	Banana	cytosol	52.28	52.66
Bra025406.1-P	Field mustard	extracellular	51.8	49.54
Bra040587.1-P	Field mustard	extracellular	51.32	48.75
Zm00001d002803_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	50.84	48.62
KXG26803	Sorghum	extracellular, plasma membrane	51.8	48.32
TraesCS2A01G388600.1	Wheat	extracellular, plasma membrane	43.17	48.26
Bra008684.1-P	Field mustard	extracellular	43.88	47.29
TraesCS2D01G386400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	50.12	47.29
Bra023528.1-P	Field mustard	extracellular, plasma membrane, vacuole	48.92	47.0
Bra039163.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	50.84	46.59
TraesCS6A01G158000.1	Wheat	endoplasmic reticulum	38.61	46.26
Os04t0540300-00	Rice	plasma membrane	48.44	46.01
TraesCS6A01G330900.1	Wheat	extracellular, plasma membrane	45.56	45.67
Bra012996.1-P	Field mustard	plasma membrane	49.88	45.51
Bra035951.1-P	Field mustard	plasma membrane	49.64	45.2
TraesCS6B01G185800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	44.36	44.58
TraesCS6B01G361700.1	Wheat	plastid	23.5	44.34
TraesCS2B01G406700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	40.29	39.16
Bra035948.1-P	Field mustard	cytosol	8.87	38.14
Bra012993.1-P	Field mustard	endoplasmic reticulum, extracellular	17.99	36.41
HORVU2Hr1G092510.1	Barley	mitochondrion	20.38	26.56
Bra035768.1-P	Field mustard	mitochondrion, peroxisome, plastid	19.9	21.84
Bra020151.1-P	Field mustard	cytosol	12.47	20.08
Bra033528.1-P	Field mustard	plasma membrane	27.82	17.6
Bra023941.1-P	Field mustard	plasma membrane	27.82	17.26
Bra036147.1-P	Field mustard	plasma membrane	27.1	17.07
Bra001795.1-P	Field mustard	endoplasmic reticulum, vacuole	27.34	17.07
Bra026378.1-P	Field mustard	extracellular, golgi, vacuole	26.62	17.0
Bra021208.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	26.62	16.64
Bra010411.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	26.38	16.59

Protein Annotations

EnsemblPlants:Bra030800.1	EnsemblPlants:Bra030800.1-P	EnsemblPlantsGene:Bra030800	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987
GO:GO:0010215	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007
InterPro:COBRA_pln	PANTHER:PTHR31673	PANTHER:PTHR31673:SF12	PFAM:PD140986	PFAM:PF04833	PIRSF:PIRSF038122
SEG:seg	UniParc:UPI00025465EE	UniProt:M4EPS9	MapMan:21.1.2.2	:	:

Description

AT1G09790 (E=4e-186) COBL6 | COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR)

Coordinates

chrA08:+:20323220..20325515

Molecular Weight (calculated)

46967.0 Da

IEP (calculated)

7.267

GRAVY (calculated)

-0.277

Length

417 amino acids

Sequence
(BLAST)

001: MVADGFDPLD PYGEMTIKWD LQQSSPGHHT VLVKIENKQE YRHVEKPGWK LSWHWVNKTV IWDMRGAETT EQGNCSAFAS SETLPHCCLR RPTIVDLLPG
101: APFNMQVSNC CRGGVLTSMS QDRINYVSAF HMTIGSFPGD PGEFIMPYDF DIGVPGYTCG NATSVDPTKY STDKGRRKTQ ALATWEAECV YSQTKSSQSP
201: KCCVSLSAFY YQNIVPCPTC SCGCSSSNCV KPGVVPPLLE QKHDPHVEVS PVVQCTNHMC PIHIHWHVKV NYKKYWRVKI TATNLNTMRN YSDWNLVVLH
301: PNLNNVTQVF SFNYKPMTPL HKSINDTGMF WGLKFYNDVL LQAGEFGNVQ TEILLEKDMG SFTFKDGWGF PRRILFNGDE CVMPSPDDYP RLPNSASSSS
401: GVSSIVTFLL CFFLLRV

Best Arabidopsis Sequence Match ( AT1G09790.1 )
(BLAST)

001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV

Arabidopsis Description

COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.