Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G388600.1 | Wheat | extracellular, plasma membrane | 48.75 | 41.82 |
| HORVU2Hr1G033080.1 | Barley | extracellular | 21.56 | 37.5 |
| TraesCS2D01G386400.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 48.75 | 35.29 |
| HORVU5Hr1G096010.13 | Barley | endoplasmic reticulum | 25.31 | 29.03 |
| Os04t0540300-00 | Rice | plasma membrane | 37.19 | 27.11 |
| KXG26803 | Sorghum | extracellular, plasma membrane | 35.94 | 25.73 |
| Zm00001d002803_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 34.69 | 25.46 |
| GSMUA_Achr4P27070_001 | Banana | cytosol | 29.38 | 22.71 |
| TraesCS2B01G406700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 30.31 | 22.61 |
| Solyc01g103860.2.1 | Tomato | cytosol | 29.06 | 21.99 |
| CDX93481 | Canola | plasma membrane | 28.12 | 20.5 |
| Bra030800.1-P | Field mustard | cytosol | 26.56 | 20.38 |
| VIT_12s0035g00630.t01 | Wine grape | extracellular, plasma membrane | 26.88 | 19.95 |
| AT1G09790.1 | Thale cress | plasma membrane | 27.5 | 19.38 |
| CDY31063 | Canola | plasma membrane | 26.25 | 19.35 |
| CDY20671 | Canola | extracellular, plasma membrane, vacuole | 26.88 | 18.9 |
| HORVU2Hr1G033070.14 | Barley | mitochondrion | 26.56 | 18.09 |
| HORVU5Hr1G067940.1 | Barley | plasma membrane, plastid | 25.62 | 17.37 |
| HORVU4Hr1G014530.1 | Barley | extracellular | 25.0 | 17.28 |
| Bra019992.1-P | Field mustard | cytosol | 21.25 | 17.13 |
| HORVU5Hr1G095910.12 | Barley | extracellular, vacuole | 24.38 | 16.96 |
| HORVU0Hr1G004650.3 | Barley | mitochondrion | 21.25 | 16.39 |
| HORVU3Hr1G007580.2 | Barley | extracellular | 18.75 | 16.0 |
| HORVU2Hr1G033060.13 | Barley | mitochondrion | 22.19 | 15.88 |
| CDX94950 | Canola | nucleus | 23.12 | 12.98 |
| HORVU2Hr1G015440.1 | Barley | cytosol | 13.44 | 7.8 |
| HORVU4Hr1G054770.1 | Barley | plastid | 18.44 | 7.47 |
| HORVU0Hr1G030030.1 | Barley | extracellular, plasma membrane | 15.31 | 7.41 |
| HORVU7Hr1G028350.1 | Barley | golgi, mitochondrion, plasma membrane | 15.31 | 7.29 |
| HORVU3Hr1G009960.1 | Barley | plastid | 3.44 | 5.05 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G092510.1 | EnsemblPlantsGene:HORVU2Hr1G092510 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 |
| InterPro:COBRA_pln | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF12 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000B468BF6 | UniProt:A0A287IYF6 | MapMan:21.1.2.2 | : |
Description
No Description!
Coordinates
chrchr2H:+:653804732..653806190
Molecular Weight (calculated)
35554.4 Da
IEP (calculated)
9.166
GRAVY (calculated)
-0.290
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: LPLSTGRRKR RVISVRFLPD SSSNPCVRAS IPHPGRLIRG YMLRSTSDDD ARVTSAVLGL YACQFQSLSS SSYPQSCHLF PSSHPPTYAE QVPSAKCLQK
101: ARALLVGRRR RVKKPSSTRP MATEQFVLFI FIFIFTCCLL SSRLGFADAY DPVDPNGNIT INWDFLSIDP NVYAVRASIH NYQLYRHIER PGWRLSWVWA
201: GREFISDVVG AETTEQGNCT GLHGARGAPP HCCEKQPVMV DLPPGAPYNR QTANCCRGGV LSSVTQNNRT ATSQFEMYIV NFELDKHGDI KMPTTFNIGV
301: PGYTCSNATT VPATRSKVDE
101: ARALLVGRRR RVKKPSSTRP MATEQFVLFI FIFIFTCCLL SSRLGFADAY DPVDPNGNIT INWDFLSIDP NVYAVRASIH NYQLYRHIER PGWRLSWVWA
201: GREFISDVVG AETTEQGNCT GLHGARGAPP HCCEKQPVMV DLPPGAPYNR QTANCCRGGV LSSVTQNNRT ATSQFEMYIV NFELDKHGDI KMPTTFNIGV
301: PGYTCSNATT VPATRSKVDE
001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV
Arabidopsis Description
COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.