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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
iPSORT:plastid
MultiLoc:mitochondrion
TargetP:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU0Hr1G004650.3 Barley mitochondrion 85.23 91.81
TraesCS2D01G182400.1 Wheat plasma membrane 87.47 87.47
TraesCS2B01G201400.1 Wheat plasma membrane 86.8 86.61
TraesCS2A01G175000.1 Wheat plasma membrane 84.79 84.41
Zm00001d022082_P001 Maize extracellular, plasma membrane, vacuole 74.72 74.72
EER99679 Sorghum plasma membrane 74.5 74.66
Os07t0604400-00 Rice extracellular 73.38 72.73
AT5G15630.1 Thale cress extracellular, plasma membrane, vacuole 63.76 66.13
GSMUA_Achr4P03210_001 Banana endoplasmic reticulum, extracellular, plasma membrane 65.55 65.55
Bra023528.1-P Field mustard extracellular, plasma membrane, vacuole 63.53 65.44
KRH45086 Soybean plasma membrane 63.09 65.43
KRH01361 Soybean extracellular, plasma membrane, vacuole 63.09 65.43
HORVU3Hr1G009960.1 Barley plastid 31.77 65.14
PGSC0003DMT400003723 Potato extracellular 63.09 64.98
Solyc03g070440.2.1 Tomato extracellular 62.42 64.73
VIT_14s0083g01150.t01 Wine grape plasma membrane 62.42 64.73
GSMUA_Achr4P14440_001 Banana plasma membrane 66.0 64.41
PGSC0003DMT400002674 Potato plasma membrane 62.42 64.29
Bra008684.1-P Field mustard extracellular 55.48 64.08
Solyc02g089130.2.1 Tomato extracellular 62.19 64.06
KRG93686 Soybean extracellular, plasma membrane, vacuole 61.07 63.34
PGSC0003DMT400082702 Potato extracellular 35.12 63.31
HORVU3Hr1G007580.2 Barley extracellular 52.8 62.93
KRH18350 Soybean cytosol 25.06 62.92
Solyc03g114900.2.1 Tomato extracellular 62.42 62.42
PGSC0003DMT400063055 Potato extracellular, mitochondrion 62.19 61.1
HORVU2Hr1G033080.1 Barley extracellular 23.04 55.98
KRH54737 Soybean plasma membrane 56.6 55.24
KRH63180 Soybean plasma membrane 56.38 55.02
HORVU5Hr1G095910.12 Barley extracellular, vacuole 55.93 54.35
VIT_17s0000g05050.t01 Wine grape cytosol 7.16 53.33
Solyc02g064790.1.1 Tomato extracellular, vacuole 7.83 50.72
CDY26445 Canola cytosol 19.02 50.3
HORVU5Hr1G067940.1 Barley plasma membrane, plastid 51.9 49.15
HORVU4Hr1G014530.1 Barley extracellular 50.78 49.03
HORVU2Hr1G033070.14 Barley mitochondrion 51.01 48.51
Bra012993.1-P Field mustard endoplasmic reticulum, extracellular 20.58 44.66
HORVU5Hr1G096010.13 Barley endoplasmic reticulum 26.85 43.01
AT5G60950.1 Thale cress endoplasmic reticulum 19.46 42.65
VIT_17s0000g05060.t01 Wine grape plasma membrane 64.43 30.93
HORVU2Hr1G092510.1 Barley mitochondrion 15.88 22.19
HORVU2Hr1G015440.1 Barley cytosol 25.28 20.51
HORVU0Hr1G030030.1 Barley extracellular, plasma membrane 26.17 17.7
HORVU7Hr1G028350.1 Barley golgi, mitochondrion, plasma membrane 25.06 16.67
HORVU4Hr1G054770.1 Barley plastid 25.73 14.56
Protein Annotations
EnsemblPlants:HORVU2Hr1G033060.13EnsemblPlantsGene:HORVU2Hr1G033060GO:GO:0005575GO:GO:0008150GO:GO:0009987GO:GO:0010215
GO:GO:0016020GO:GO:0016043GO:GO:0016049GO:GO:0031225GO:GO:0040007InterPro:COBRA_pln
PANTHER:PTHR31673PANTHER:PTHR31673:SF20PFAM:PD140986PFAM:PF04833PIRSF:PIRSF038122SEG:seg
UniParc:UPI000B461F58UniProt:A0A287HM57MapMan:21.1.2.2:::
Description
COBRA-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287HM57]
Coordinates
chrchr2H:+:130881798..130883512
Molecular Weight (calculated)
49869.7 Da
IEP (calculated)
9.992
GRAVY (calculated)
-0.335
Length
447 amino acids
Sequence
(BLAST)
001: GAPQRRPRAD PRRGGHALRR RFVIGLRPAG SQREHHHQMG RPVVDARRIR RELVTINNFQ TYRQIMAPGW TVGWTWAKRE VIWSMVGAQA TEQGDCSKFK
101: ANLPHSCKRT PAVVDLLPGV PYNQQIANCC RGGVVSAYGQ DPSGAVSSFQ VSVGQAGTTN RTVKVPKNFT LLGPGPGYTC GPAKVVPSTV FLTADHRRKT
201: QALMTWNVTC TYSQHLASKY PTCCVSFSSF YNDTIVPCAK CTCGCEHKTC ARSERDSKRL MSASGKSAVT ARGHVNRQSA APLLQCTTHM CPVRVHWHVK
301: LNYHDYWRAK VTVTNFNYRM NYTGWTLVAQ HPNLDNITEV FSFDYKPVVS YGSINDTALF YGMKFFNDQL MEAGPYGNVQ SEVLMRKDAS TFTFRQGWAF
401: PRKIYFNGDE CRMPPPDSYP YLPNSAPASL LSSASAVIVA FLVLLMA
Best Arabidopsis Sequence Match ( AT5G15630.4 )
(BLAST)
001: MNNFQIYRHI QNPGWTLGWT WAKKEVIWSM VGAQTTEQGD CSKFKGNVPH CCKKTPTVVD LLPGVPYNQQ FSNCCKGGVI GAWGQDPSAA VSQFQVSAGL
101: AGTTNKTVKL PKNFTLLGPG PGYTCGPAKI VPSTVFLTTD KRRKTQALMT WNVTCTYSQF LARKHPSCCV SFSSFYNDTI TPCPSCACGC ENKKSCVKAD
201: SKILTKKGLN TPKKDNTPLL QCTHHMCPVR VHWHVKTNYK DYWRVKIAIT NFNYRMNHTL WTLAIQHPNL NNVTQVFSFD YKPVSPYGSI NDTGMFYGTK
301: FYNDLLMEAG PSGNVQSEVL LQKDQKTFTF KQGWAFPRKV YFNGDECMLP PPDSYPFLPN SAQGNFASFS LTILLLLFIS IW
Arabidopsis Description
COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [mitochondrion,vacuole,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.