Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 5
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_14s0083g01150.t01 | Wine grape | plasma membrane | 36.2 | 78.19 |
Solyc03g114900.2.1 | Tomato | extracellular | 36.2 | 75.39 |
GSMUA_Achr4P03210_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 35.88 | 74.72 |
PGSC0003DMT400063055 | Potato | extracellular, mitochondrion | 36.3 | 74.29 |
GSMUA_Achr4P14440_001 | Banana | plasma membrane | 36.09 | 73.36 |
EER94687 | Sorghum | extracellular | 33.83 | 70.63 |
TraesCS5D01G107900.1 | Wheat | extracellular | 33.83 | 70.16 |
TraesCS5A01G095200.1 | Wheat | extracellular | 33.83 | 70.16 |
TraesCS5B01G101400.1 | Wheat | extracellular | 33.83 | 70.0 |
Zm00001d047276_P001 | Maize | plasma membrane | 33.73 | 69.78 |
TraesCS2B01G201400.1 | Wheat | plasma membrane | 33.51 | 69.64 |
TraesCS2D01G182400.1 | Wheat | plasma membrane | 33.08 | 68.9 |
EER99679 | Sorghum | plasma membrane | 32.98 | 68.83 |
TraesCS2A01G175000.1 | Wheat | plasma membrane | 32.76 | 67.93 |
Zm00001d022082_P001 | Maize | extracellular, plasma membrane, vacuole | 32.55 | 67.79 |
Os03t0416200-01 | Rice | extracellular, golgi, plasma membrane | 33.94 | 67.52 |
HORVU3Hr1G007580.2 | Barley | extracellular | 27.18 | 67.47 |
VIT_17s0000g05050.t01 | Wine grape | cytosol | 4.3 | 66.67 |
HORVU3Hr1G009960.1 | Barley | plastid | 15.36 | 65.6 |
VIT_14s0083g01160.t01 | Wine grape | vacuole | 30.72 | 65.6 |
Os07t0604400-00 | Rice | extracellular | 31.36 | 64.75 |
HORVU2Hr1G033060.13 | Barley | mitochondrion | 30.93 | 64.43 |
VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 30.83 | 62.94 |
TraesCSU01G047200.1 | Wheat | plastid | 15.68 | 62.93 |
TraesCS3D01G047900.1 | Wheat | plastid | 16.33 | 61.04 |
HORVU0Hr1G004650.3 | Barley | mitochondrion | 27.07 | 60.72 |
HORVU2Hr1G033080.1 | Barley | extracellular | 10.85 | 54.89 |
VIT_12s0035g00630.t01 | Wine grape | extracellular, plasma membrane | 22.66 | 48.96 |
VIT_03s0038g01430.t01 | Wine grape | mitochondrion | 7.41 | 41.82 |
VIT_03s0038g01420.t01 | Wine grape | extracellular, plasma membrane | 11.06 | 41.2 |
VIT_07s0005g01020.t01 | Wine grape | plasma membrane | 13.53 | 19.47 |
VIT_19s0177g00160.t01 | Wine grape | plasma membrane | 13.32 | 18.93 |
VIT_05s0077g01470.t01 | Wine grape | plasma membrane | 13.21 | 18.89 |
VIT_10s0116g00620.t01 | Wine grape | extracellular | 12.57 | 17.89 |
Protein Annotations
EntrezGene:100250060 | wikigene:100250060 | EntrezGene:100258803 | wikigene:100258803 | MapMan:21.1.2.2 | ProteinID:CCB43149 |
ProteinID:CCB43149.1 | InterPro:COBRA_pln | UniProt:F6GTE0 | EMBL:FN594950 | GO:GO:0005575 | GO:GO:0008150 |
GO:GO:0009987 | GO:GO:0010215 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016049 |
GO:GO:0031225 | GO:GO:0040007 | EntrezGene:LOC100250060 | wikigene:LOC100250060 | EntrezGene:LOC100258803 | wikigene:LOC100258803 |
PFAM:PD140986 | PFAM:PF04833 | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF2 | TIGR:TC53078 | TIGR:TC56692 |
TIGR:TC68223 | TMHMM:TMhelix | UniParc:UPI000210A5E1 | ArrayExpress:VIT_17s0000g05060 | EnsemblPlantsGene:VIT_17s0000g05060 | EnsemblPlants:VIT_17s0000g05060.t01 |
unigene:Vvi.4683 | RefSeq:XP_002264378 | RefSeq:XP_002264378.1 | RefSeq:XP_002265282 | RefSeq:XP_002265282.2 | SEG:seg |
Description
No Description!
Coordinates
chr17:+:5529705..5544384
Molecular Weight (calculated)
104888.0 Da
IEP (calculated)
8.400
GRAVY (calculated)
-0.137
Length
931 amino acids
Sequence
(BLAST)
(BLAST)
001: MTINQMSVTD ISIINHRNIH IMEFNRVAYS IVSAVFFSMV LSPAVAYDPL DPNGNITIKW DVMSWTSDGY VAVVTMSNFQ MYRHIMSPGW TLGWIWAKKE
101: VIWSMVGAQA TEQGDCSKFK GNIPHCCKRN PTVIDLLPGV PYNQQIANCC KGGVVASWGQ DSSAAVSSFQ LSVGLSGTSN KTVRLPKNFT LLGPGPGYTC
201: GQAKTVPSSI FLSSDGRRKT QALMTWNVTC TYSQMVVSKY PSCCVSFSSF YNSTITPCTS CACGCQNKNN CIMSDTKIES VVGLHTPTKD NMPLLQCTQH
301: NCPVRVHWHV KVNYKEYWRV KITITNFNYR MNYTQWTLVA QHPNLNNITQ VFSFAYKPLI PYTSINDSGM FYGIKFYNDV LMEDGPDGNV QSEMILQKDK
401: NTFTLKEGWA FPQRIYFNGD ECMMPLPDSY PLLAGSAPAN QIALSTLASL VLLILLAFQA FDLGELIFVM EFNNSANPVH HTPFEAKDRC QWQDCYSFRE
501: LKHIFSVVIF FMMVSHAIAY DPLDPTGNIT IKWDVVSWTP DGYVALVTMN NFQMYRHIMT PGWTLSWSWA KKEVIWSMVG AQTTEQGDCS KFKANIPHCC
601: EKTPTVVDLL PGVPYNQQIA NCCKAGVVAA WGQDPAGSVS SFQVSVGQAG TSNKTVKLPK NFTLLGPGPG YTCGPAKIVP STIYLTPDHR RKTQAMMTWN
701: VTCTYSQFLA SKNPTCCVSF SSFYNDTMTP CPSCACGCRN KNMCISSDSK KLKALHNPKR SNTPLLQCTH HMCPIRVHWH VKLNYKDYWR VKIAITNFNY
801: RMNYTQWTLV AQHPNLNNVT QVFSFDYKPL VPYESINDTG MFYGMKFYND LLVEAGQHGN VQSEVLLQKN KDTFTFKQGW AFPRKVYFNG DECKLPPPDT
901: YPFLPNSAHA NPFAFWTMAA PLLLMILYTI W
101: VIWSMVGAQA TEQGDCSKFK GNIPHCCKRN PTVIDLLPGV PYNQQIANCC KGGVVASWGQ DSSAAVSSFQ LSVGLSGTSN KTVRLPKNFT LLGPGPGYTC
201: GQAKTVPSSI FLSSDGRRKT QALMTWNVTC TYSQMVVSKY PSCCVSFSSF YNSTITPCTS CACGCQNKNN CIMSDTKIES VVGLHTPTKD NMPLLQCTQH
301: NCPVRVHWHV KVNYKEYWRV KITITNFNYR MNYTQWTLVA QHPNLNNITQ VFSFAYKPLI PYTSINDSGM FYGIKFYNDV LMEDGPDGNV QSEMILQKDK
401: NTFTLKEGWA FPQRIYFNGD ECMMPLPDSY PLLAGSAPAN QIALSTLASL VLLILLAFQA FDLGELIFVM EFNNSANPVH HTPFEAKDRC QWQDCYSFRE
501: LKHIFSVVIF FMMVSHAIAY DPLDPTGNIT IKWDVVSWTP DGYVALVTMN NFQMYRHIMT PGWTLSWSWA KKEVIWSMVG AQTTEQGDCS KFKANIPHCC
601: EKTPTVVDLL PGVPYNQQIA NCCKAGVVAA WGQDPAGSVS SFQVSVGQAG TSNKTVKLPK NFTLLGPGPG YTCGPAKIVP STIYLTPDHR RKTQAMMTWN
701: VTCTYSQFLA SKNPTCCVSF SSFYNDTMTP CPSCACGCRN KNMCISSDSK KLKALHNPKR SNTPLLQCTH HMCPIRVHWH VKLNYKDYWR VKIAITNFNY
801: RMNYTQWTLV AQHPNLNNVT QVFSFDYKPL VPYESINDTG MFYGMKFYND LLVEAGQHGN VQSEVLLQKN KDTFTFKQGW AFPRKVYFNG DECKLPPPDT
901: YPFLPNSAHA NPFAFWTMAA PLLLMILYTI W
001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W
Arabidopsis Description
COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.