Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G009960.1 | Barley | plastid | 60.0 | 16.51 |
| TraesCSU01G047200.1 | Wheat | plastid | 56.67 | 14.66 |
| TraesCS3D01G047900.1 | Wheat | plastid | 56.67 | 13.65 |
| HORVU3Hr1G007580.2 | Barley | extracellular | 63.33 | 10.13 |
| PGSC0003DMT400002674 | Potato | plasma membrane | 68.33 | 9.45 |
| VIT_14s0083g01150.t01 | Wine grape | plasma membrane | 65.0 | 9.05 |
| PGSC0003DMT400003723 | Potato | extracellular | 65.0 | 8.99 |
| KRH54737 | Soybean | plasma membrane | 68.33 | 8.95 |
| KRH63180 | Soybean | plasma membrane | 66.67 | 8.73 |
| EER94687 | Sorghum | extracellular | 63.33 | 8.52 |
| VIT_03s0038g01430.t01 | Wine grape | mitochondrion | 23.33 | 8.48 |
| TraesCS5D01G107900.1 | Wheat | extracellular | 63.33 | 8.46 |
| TraesCS5A01G095200.1 | Wheat | extracellular | 63.33 | 8.46 |
| Zm00001d047276_P001 | Maize | plasma membrane | 63.33 | 8.44 |
| TraesCS5B01G101400.1 | Wheat | extracellular | 63.33 | 8.44 |
| GSMUA_Achr4P14440_001 | Banana | plasma membrane | 63.33 | 8.3 |
| GSMUA_Achr4P03210_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 61.67 | 8.28 |
| Os03t0416200-01 | Rice | extracellular, golgi, plasma membrane | 63.33 | 8.12 |
| HORVU0Hr1G004650.3 | Barley | mitochondrion | 53.33 | 7.71 |
| EER99679 | Sorghum | plasma membrane | 56.67 | 7.62 |
| Zm00001d022082_P001 | Maize | extracellular, plasma membrane, vacuole | 56.67 | 7.61 |
| Os07t0604400-00 | Rice | extracellular | 56.67 | 7.54 |
| TraesCS2A01G175000.1 | Wheat | plasma membrane | 55.0 | 7.35 |
| TraesCS2D01G182400.1 | Wheat | plasma membrane | 53.33 | 7.16 |
| HORVU2Hr1G033060.13 | Barley | mitochondrion | 53.33 | 7.16 |
| TraesCS2B01G201400.1 | Wheat | plasma membrane | 53.33 | 7.14 |
| VIT_14s0083g01160.t01 | Wine grape | vacuole | 46.67 | 6.42 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 48.33 | 6.36 |
| VIT_12s0035g00630.t01 | Wine grape | extracellular, plasma membrane | 43.33 | 6.03 |
| VIT_17s0000g05060.t01 | Wine grape | plasma membrane | 66.67 | 4.3 |
| VIT_07s0005g01020.t01 | Wine grape | plasma membrane | 26.67 | 2.47 |
| VIT_10s0116g00620.t01 | Wine grape | extracellular | 26.67 | 2.45 |
| VIT_19s0177g00160.t01 | Wine grape | plasma membrane | 25.0 | 2.29 |
| VIT_05s0077g01470.t01 | Wine grape | plasma membrane | 23.33 | 2.15 |
| Solyc02g064790.1.1 | Tomato | extracellular, vacuole | 1.67 | 1.45 |
| VIT_03s0038g01420.t01 | Wine grape | extracellular, plasma membrane | 0.0 | 0.0 |
| HORVU2Hr1G033080.1 | Barley | extracellular | 0.0 | 0.0 |
| PGSC0003DMT400082702 | Potato | extracellular | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_17s0000g05050 | EMBL:FN594950 | EnsemblPlants:VIT_17s0000g05050.t01 | EnsemblPlantsGene:VIT_17s0000g05050 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0010215 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 |
| GO:GO:0040007 | InterPro:COBRA_pln | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF19 | ProteinID:CBI15332 | ProteinID:CBI15332.3 |
| TIGR:TC52958 | UniParc:UPI0001BE0BC7 | UniProt:D7SIM1 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr17:+:5527654..5529076
Molecular Weight (calculated)
6839.2 Da
IEP (calculated)
9.435
GRAVY (calculated)
-0.275
Length
60 amino acids
Sequence
(BLAST)
(BLAST)
1: MKIALLQHPN LNNVAQVYSF VYKPLVPYKS INDTGIFYGI KYYNDILREA GPQRGTCSQS
001: MNNFQIYRHI QNPGWTLGWT WAKKEVIWSM VGAQTTEQGD CSKFKGNVPH CCKKTPTVVD LLPGVPYNQQ FSNCCKGGVI GAWGQDPSAA VSQFQVSAGL
101: AGTTNKTVKL PKNFTLLGPG PGYTCGPAKI VPSTVFLTTD KRRKTQALMT WNVTCTYSQF LARKHPSCCV SFSSFYNDTI TPCPSCACGC ENKKSCVKAD
201: SKILTKKGLN TPKKDNTPLL QCTHHMCPVR VHWHVKTNYK DYWRVKIAIT NFNYRMNHTL WTLAIQHPNL NNVTQVFSFD YKPVSPYGSI NDTGMFYGTK
301: FYNDLLMEAG PSGNVQSEVL LQKDQKTFTF KQGWAFPRKV YFNGDECMLP PPDSYPFLPN SAQGNFASFS LTILLLLFIS IW
101: AGTTNKTVKL PKNFTLLGPG PGYTCGPAKI VPSTVFLTTD KRRKTQALMT WNVTCTYSQF LARKHPSCCV SFSSFYNDTI TPCPSCACGC ENKKSCVKAD
201: SKILTKKGLN TPKKDNTPLL QCTHHMCPVR VHWHVKTNYK DYWRVKIAIT NFNYRMNHTL WTLAIQHPNL NNVTQVFSFD YKPVSPYGSI NDTGMFYGTK
301: FYNDLLMEAG PSGNVQSEVL LQKDQKTFTF KQGWAFPRKV YFNGDECMLP PPDSYPFLPN SAQGNFASFS LTILLLLFIS IW
Arabidopsis Description
COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [mitochondrion,vacuole,nucleus,cytosol]
SUBAcon: [mitochondrion,vacuole,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.