Factsheet for Zm00001d047276_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94687	Sorghum	extracellular	93.78	94.62
TraesCS5D01G107900.1	Wheat	extracellular	83.78	83.96
TraesCS5A01G095200.1	Wheat	extracellular	83.56	83.74
TraesCS5B01G101400.1	Wheat	extracellular	83.56	83.56
Os03t0416200-01	Rice	extracellular, golgi, plasma membrane	86.44	83.12
HORVU3Hr1G007580.2	Barley	extracellular	68.89	82.67
HORVU3Hr1G009960.1	Barley	plastid	38.44	79.36
TraesCSU01G047200.1	Wheat	plastid	39.11	75.86
TraesCS3D01G047900.1	Wheat	plastid	41.11	74.3
Zm00001d022082_P001	Maize	extracellular, plasma membrane, vacuole	73.78	74.27
GSMUA_Achr4P03210_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	71.78	72.26
KRH45086	Soybean	plasma membrane	68.44	71.46
Solyc03g070440.2.1	Tomato	extracellular	68.44	71.46
KRH01361	Soybean	extracellular, plasma membrane, vacuole	68.44	71.46
GSMUA_Achr4P14440_001	Banana	plasma membrane	72.67	71.4
PGSC0003DMT400082702	Potato	extracellular	39.33	71.37
VIT_14s0083g01150.t01	Wine grape	plasma membrane	68.22	71.23
AT5G15630.1	Thale cress	extracellular, plasma membrane, vacuole	68.22	71.23
Bra008684.1-P	Field mustard	extracellular	61.11	71.06
PGSC0003DMT400002674	Potato	plasma membrane	68.44	70.97
KRG93686	Soybean	extracellular, plasma membrane, vacuole	67.56	70.53
PGSC0003DMT400003723	Potato	extracellular	68.0	70.51
KRH18350	Soybean	cytosol	27.78	70.22
Solyc02g089130.2.1	Tomato	extracellular	67.56	70.05
Bra023528.1-P	Field mustard	extracellular, plasma membrane, vacuole	67.56	70.05
Solyc03g114900.2.1	Tomato	extracellular	68.89	69.35
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	68.44	67.69
Zm00001d031479_P001	Maize	cytosol, mitochondrion	24.67	67.68
Zm00001d034049_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	64.22	63.94
Zm00001d013256_P001	Maize	extracellular	63.56	63.7
VIT_17s0000g05050.t01	Wine grape	cytosol	8.44	63.33
Zm00001d022081_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	60.22	58.91
KRH63180	Soybean	plasma membrane	59.56	58.52
KRH54737	Soybean	plasma membrane	59.56	58.52
CDY26445	Canola	cytosol	19.78	52.66
Bra012993.1-P	Field mustard	endoplasmic reticulum, extracellular	23.78	51.94
AT5G60950.1	Thale cress	endoplasmic reticulum	22.89	50.49
Zm00001d002803_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	48.0	49.54
Solyc02g064790.1.1	Tomato	extracellular, vacuole	7.11	46.38
VIT_17s0000g05060.t01	Wine grape	plasma membrane	69.78	33.73
Zm00001d007208_P001	Maize	extracellular, plasma membrane, vacuole	27.78	19.11
Zm00001d028826_P001	Maize	plasma membrane	27.11	18.29
Zm00001d021661_P001	Maize	mitochondrion	26.67	17.7

Protein Annotations

MapMan:21.1.2.2	EntrezGene:778435	UniProt:A0EJ90	ProteinID:AQL06047.1	EMBL:BT034117	EMBL:BT064364
EMBL:BT067488	EMBL:BT067541	InterPro:COBRA_pln	EMBL:DQ139874	EMBL:EU965310	GO:GO:0005575
GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	PFAM:PD140986	PFAM:PF04833	PIRSF:PIRSF038122
PFscan:PS51257	PANTHER:PTHR31673	PANTHER:PTHR31673:SF2	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0000E5BECC
EnsemblPlantsGene:Zm00001d047276	EnsemblPlants:Zm00001d047276_P001	EnsemblPlants:Zm00001d047276_T001	SEG:seg	:	:

Description

brittle stalk2 brittle stalk2

Coordinates

chr9:+:125270207..125272239

Molecular Weight (calculated)

49270.4 Da

IEP (calculated)

8.612

GRAVY (calculated)

-0.008

Length

450 amino acids

Sequence
(BLAST)

001: MTMGLRVRDS SALLALAVAL ACCSVAVVAY DPLDPNGNIT IKWDVISWTP DGYVAMVTMS NYQMYRHIMA PGWTLGWSWA KKEVIWSIVG AQATEQGDCS
101: KFKGGIPHCC KRTPAVVDLL PGVPYNQQIA NCCKAGVVSA YGQDPAGSVS AFQVSVGLAG TTNKTVKLPR NFTLMGPGLG YTCGPAAVVP STVYWTPDHR
201: RRTQALMTWT VTCTYSQQLA SRYPSCCVSF SSFYNSTIVP CARCACGCGG HGGHAGPGGC IEGDSKRALS AGVNTPRKDG QALLQCTPHM CPIRVHWHVK
301: LNYKDYWRAK IAITNYNYRM NYTQWTLVAQ HPNLDNVTEV FSFQYKPLQP YGSINDTGMF YGLKFYNDFL MEAGPFGNVQ SEVLMRKDAR TFTFSMGWAF
401: PRKIYFNGDE CKMPPPDSYP YLPNAAPVVA SQLVLSAAAS AFLLLLLLVA

Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)

001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W

Arabidopsis Description

COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.