Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER97506 | Sorghum | extracellular, plasma membrane | 87.39 | 87.77 |
| Os07t0604300-01 | Rice | extracellular | 78.91 | 81.39 |
| KRH72178 | Soybean | mitochondrion | 58.7 | 73.17 |
| VIT_14s0083g01160.t01 | Wine grape | vacuole | 69.35 | 73.17 |
| Solyc02g089120.2.1 | Tomato | extracellular | 70.22 | 72.26 |
| PGSC0003DMT400003470 | Potato | extracellular | 70.0 | 72.04 |
| TraesCS3A01G409900.1 | Wheat | plastid | 42.61 | 70.76 |
| Solyc02g065770.2.1 | Tomato | extracellular | 68.04 | 70.5 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 69.78 | 70.39 |
| TraesCS2A01G175100.1 | Wheat | extracellular | 68.48 | 69.54 |
| Bra025406.1-P | Field mustard | extracellular | 65.87 | 69.5 |
| CDX86358 | Canola | extracellular | 65.87 | 69.5 |
| KRH01360 | Soybean | extracellular, golgi, plasma membrane | 67.61 | 69.42 |
| KRH03165 | Soybean | extracellular | 68.48 | 69.38 |
| PGSC0003DMT400068328 | Potato | extracellular | 66.96 | 69.37 |
| KRH63181 | Soybean | endoplasmic reticulum | 68.48 | 69.08 |
| KRH54735 | Soybean | endoplasmic reticulum | 68.48 | 69.08 |
| TraesCS2D01G182500.1 | Wheat | golgi | 68.26 | 69.01 |
| CDX85277 | Canola | extracellular | 65.22 | 68.81 |
| KRH45084 | Soybean | extracellular, golgi, plasma membrane | 66.96 | 68.75 |
| CDY70289 | Canola | extracellular | 58.7 | 68.01 |
| KRH18352 | Soybean | plasma membrane | 67.61 | 67.9 |
| TraesCS2B01G201500.1 | Wheat | plasma membrane | 67.61 | 67.76 |
| Zm00001d013256_P001 | Maize | extracellular | 65.87 | 67.48 |
| Zm00001d034049_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 66.3 | 67.48 |
| KRG93684 | Soybean | extracellular, vacuole | 66.52 | 67.4 |
| AT3G29810.1 | Thale cress | extracellular | 64.57 | 67.35 |
| AT3G02210.1 | Thale cress | extracellular | 65.87 | 67.04 |
| HORVU2Hr1G033070.14 | Barley | mitochondrion | 68.04 | 66.6 |
| Bra040587.1-P | Field mustard | extracellular | 63.48 | 66.51 |
| Bra039163.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 65.43 | 66.15 |
| CDY43250 | Canola | plasma membrane | 65.43 | 65.86 |
| CDY60470 | Canola | plasma membrane | 65.43 | 65.72 |
| AT5G60920.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 64.13 | 64.69 |
| Zm00001d031479_P001 | Maize | cytosol, mitochondrion | 23.04 | 64.63 |
| CDY02184 | Canola | plasma membrane | 64.13 | 64.55 |
| Bra012996.1-P | Field mustard | plasma membrane | 63.91 | 64.33 |
| CDX87193 | Canola | plasma membrane | 63.7 | 64.25 |
| CDY16831 | Canola | plasma membrane | 63.91 | 64.19 |
| CDY58691 | Canola | plasma membrane | 63.7 | 63.97 |
| TraesCS3B01G443000.1 | Wheat | cytosol, plasma membrane, vacuole | 57.83 | 63.64 |
| HORVU5Hr1G067940.1 | Barley | plasma membrane, plastid | 65.22 | 63.56 |
| Bra035951.1-P | Field mustard | plasma membrane | 63.26 | 63.54 |
| Zm00001d022082_P001 | Maize | extracellular, plasma membrane, vacuole | 60.22 | 61.97 |
| Bra029346.1-P | Field mustard | cytosol, plasma membrane, plastid | 16.3 | 60.98 |
| CDY42842 | Canola | cytosol | 16.09 | 60.66 |
| Zm00001d047276_P001 | Maize | plasma membrane | 58.91 | 60.22 |
| TraesCS3D01G404800.2 | Wheat | plasma membrane | 59.35 | 59.74 |
| CDY24004 | Canola | cytosol, nucleus, plastid | 10.65 | 57.65 |
| KRH56778 | Soybean | extracellular | 24.78 | 54.55 |
| CDY29033 | Canola | cytosol | 21.52 | 54.4 |
| Zm00001d002803_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 48.91 | 51.61 |
| CDY14723 | Canola | cytosol | 26.52 | 38.36 |
| Zm00001d028826_P001 | Maize | plasma membrane | 26.96 | 18.59 |
| Zm00001d007208_P001 | Maize | extracellular, plasma membrane, vacuole | 25.87 | 18.2 |
| Zm00001d021661_P001 | Maize | mitochondrion | 24.35 | 16.52 |
Protein Annotations
| EntrezGene:100037799 | MapMan:21.1.2.2 | UniProt:A1DZD7 | EMBL:BT043411 | EMBL:BT054453 | EMBL:BT066815 |
| InterPro:COBRA_pln | EMBL:EF078701 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 | ProteinID:ONM59465.1 |
| PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF7 | SignalP:SignalP-noTM |
| UniParc:UPI0000EA33B7 | EnsemblPlantsGene:Zm00001d022081 | EnsemblPlants:Zm00001d022081_P001 | EnsemblPlants:Zm00001d022081_T001 | SEG:seg | : |
Description
Protein COBRA
Coordinates
chr7:+:169727902..169730523
Molecular Weight (calculated)
50766.3 Da
IEP (calculated)
8.800
GRAVY (calculated)
-0.166
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPPPLLPAR FVAASVALLA VAFSSSLTRP SGAYDPLDPN GNITIKWDVI QWTADGYVAV VSLYNYQQYR HIQAPPGWRL GWVWAKKEVI WAMTGGQATE
101: QGDCSRFKAS VLPHCCRRDP EVVDLLPGTP YNTQTANCCR GGVLASWAQD PSDAVASFQV SVGQAGSTNR TVKVPRNFTL LAPGPGYTCG AAKLVKPTKF
201: MSQDGRRSTQ AHMTWNVTCT YSQFLAQRSP TCCVSLSSFY NDTIVSCPAC SCGCQNNNSS STAAPGSCVE GSRRSPYLAS VVNDPSKNSL APLVQCTSHM
301: CPVRVHWHVK VSYKEYWRVK ITVTNFNYRM NYSQWNLVAQ HPNFDNLTTI FSFNYRPLNP YGVINDTAML WGIKYYNDLL MTAGPDGNVQ SELLFRKEPS
401: TFTFHKGWAF PRRVYFNGDN CVMPPPDAYP WLPNAASPRL SPSLLLPLVA AAWTAFAVLS
101: QGDCSRFKAS VLPHCCRRDP EVVDLLPGTP YNTQTANCCR GGVLASWAQD PSDAVASFQV SVGQAGSTNR TVKVPRNFTL LAPGPGYTCG AAKLVKPTKF
201: MSQDGRRSTQ AHMTWNVTCT YSQFLAQRSP TCCVSLSSFY NDTIVSCPAC SCGCQNNNSS STAAPGSCVE GSRRSPYLAS VVNDPSKNSL APLVQCTSHM
301: CPVRVHWHVK VSYKEYWRVK ITVTNFNYRM NYSQWNLVAQ HPNFDNLTTI FSFNYRPLNP YGVINDTAML WGIKYYNDLL MTAGPDGNVQ SELLFRKEPS
401: TFTFHKGWAF PRRVYFNGDN CVMPPPDAYP WLPNAASPRL SPSLLLPLVA AAWTAFAVLS
001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL
Arabidopsis Description
COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.