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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, plastid
Any Predictor:mitochondrion, plasma membrane, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plasma membrane
TargetP:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G409900.1 Wheat plastid 54.45 92.78
TraesCS3B01G443000.1 Wheat cytosol, plasma membrane, vacuole 76.69 86.6
TraesCS3D01G404800.2 Wheat plasma membrane 76.27 78.77
Os07t0604300-01 Rice extracellular 63.98 67.71
EER97506 Sorghum extracellular, plasma membrane 65.68 67.69
KRH72178 Soybean mitochondrion 52.12 66.67
Zm00001d022081_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 63.56 65.22
VIT_14s0083g01160.t01 Wine grape vacuole 59.11 63.99
KRH01360 Soybean extracellular, golgi, plasma membrane 59.75 62.95
CDY70289 Canola extracellular 52.54 62.47
CDX86358 Canola extracellular 57.63 62.39
Bra025406.1-P Field mustard extracellular 57.63 62.39
VIT_17s0000g05070.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 60.17 62.28
KRH45084 Soybean extracellular, golgi, plasma membrane 58.9 62.05
PGSC0003DMT400003470 Potato extracellular 58.69 61.97
Solyc02g065770.2.1 Tomato extracellular 58.26 61.94
CDX85277 Canola extracellular 57.2 61.93
KRG93684 Soybean extracellular, vacuole 59.53 61.89
Solyc02g089120.2.1 Tomato extracellular 58.05 61.3
PGSC0003DMT400068328 Potato extracellular 57.63 61.26
KRH54735 Soybean endoplasmic reticulum 58.9 60.96
Bra040587.1-P Field mustard extracellular 56.57 60.82
KRH03165 Soybean extracellular 58.47 60.79
HORVU2Hr1G033070.14 Barley mitochondrion 60.17 60.43
KRH63181 Soybean endoplasmic reticulum 58.26 60.31
KRH18352 Soybean plasma membrane 58.26 60.04
AT3G29810.1 Thale cress extracellular 55.72 59.64
AT5G60920.1 Thale cress endoplasmic reticulum, plasma membrane, plastid 55.93 57.89
HORVU4Hr1G014530.1 Barley extracellular 56.78 57.88
CDY02184 Canola plasma membrane 55.72 57.55
CDX87193 Canola plasma membrane 55.51 57.46
CDY58691 Canola plasma membrane 55.72 57.42
HORVU5Hr1G095910.12 Barley extracellular, vacuole 55.93 57.39
Bra012996.1-P Field mustard plasma membrane 55.51 57.33
AT3G02210.1 Thale cress extracellular 54.87 57.3
CDY16831 Canola plasma membrane 55.51 57.21
Bra035951.1-P Field mustard plasma membrane 54.87 56.55
HORVU3Hr1G007580.2 Barley extracellular 44.92 56.53
Bra039163.1-P Field mustard endoplasmic reticulum, plasma membrane, plastid 54.45 56.48
CDY43250 Canola plasma membrane 54.45 56.24
CDY60470 Canola plasma membrane 54.24 55.9
HORVU3Hr1G009960.1 Barley plastid 25.0 54.13
CDY24004 Canola cytosol, nucleus, plastid 9.53 52.94
CDY42842 Canola cytosol 13.56 52.46
HORVU2Hr1G033060.13 Barley mitochondrion 49.15 51.9
Bra029346.1-P Field mustard cytosol, plasma membrane, plastid 13.35 51.22
CDY29033 Canola cytosol 18.86 48.9
HORVU5Hr1G096010.13 Barley endoplasmic reticulum 27.97 47.31
HORVU0Hr1G004650.3 Barley mitochondrion 41.53 47.23
KRH56778 Soybean extracellular 20.76 46.89
HORVU2Hr1G033080.1 Barley extracellular 17.8 45.65
CDY14723 Canola cytosol 23.52 34.91
HORVU2Hr1G092510.1 Barley mitochondrion 17.37 25.62
HORVU2Hr1G015440.1 Barley cytosol 21.61 18.51
HORVU7Hr1G028350.1 Barley golgi, mitochondrion, plasma membrane 25.0 17.56
HORVU0Hr1G030030.1 Barley extracellular, plasma membrane 22.46 16.04
HORVU4Hr1G054770.1 Barley plastid 24.58 14.68
Protein Annotations
EnsemblPlants:HORVU5Hr1G067940.1EnsemblPlantsGene:HORVU5Hr1G067940GO:GO:0005575GO:GO:0008150GO:GO:0009987GO:GO:0010215
GO:GO:0016020GO:GO:0016043GO:GO:0016049GO:GO:0031225GO:GO:0040007InterPro:COBRA_pln
PANTHER:PTHR31673PANTHER:PTHR31673:SF7PFAM:PD140986PFAM:PF04833PIRSF:PIRSF038122SEG:seg
UniParc:UPI000B467548UniProt:A0A287RLZ3MapMan:21.1.2.2:::
Description
COBRA-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287RLZ3]
Coordinates
chrchr5H:+:515004695..515007457
Molecular Weight (calculated)
52434.7 Da
IEP (calculated)
8.501
GRAVY (calculated)
-0.146
Length
472 amino acids
Sequence
(BLAST)
001: ATFPSSFSSS RSSLFTSSSC TLASSPRIMF LSTRAMSPAL LMFALACLLG SLGAYDPLDP TGNITIRWDV MSWVLDGYVA EVSLFNYQQY RHIQPPGWKL
101: GWVWSKKEVI WYVQGGQATE QGDCSKFKEI VPHSCKVNPE IVDLLPGAPF NRQNANCCKG GVLSSLAQDP ANVVVSFEVS VGRSGITTKT LELPVNFTLK
201: APGPGYTCGP ATKLDKPTKF TTPDGRRKTQ AHMTWTVTCT YSQFHALRSP TCCLSLSAFY SDTLVTCPKC SCGCQDNSTK PGICVQGNSP DLGSVMNDQD
301: KNDLAPLVQC TTHMCPIRVH WHVKANYKEY WRAKITVTNF NYRMNYSQWN LVAQHPNFNS LTSITSFSYT ALNPYGLMND TALLWGIRYY NDYLVTAGPD
401: GYVQSELLFR KDPSTFTLRA GWAFPRRVYF NGDKCVMPPP DAYPWLPNAS TKPTVSVIVP LVLWILLANP YS
Best Arabidopsis Sequence Match ( AT3G02210.1 )
(BLAST)
001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL
Arabidopsis Description
COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.