Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 8
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g089120.2.1 | Tomato | extracellular | 96.87 | 96.87 |
| PGSC0003DMT400068328 | Potato | extracellular | 84.12 | 84.68 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 81.43 | 79.82 |
| GSMUA_Achr4P01440_001 | Banana | extracellular, plasma membrane | 78.3 | 76.59 |
| KRH03165 | Soybean | extracellular | 77.63 | 76.43 |
| GSMUA_Achr1P24500_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 78.08 | 76.2 |
| KRH54735 | Soybean | endoplasmic reticulum | 77.63 | 76.1 |
| Zm00001d031479_P001 | Maize | cytosol, mitochondrion | 27.74 | 75.61 |
| KRH63181 | Soybean | endoplasmic reticulum | 76.96 | 75.44 |
| AT5G60920.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 76.51 | 75.0 |
| CDX87193 | Canola | plasma membrane | 74.94 | 73.46 |
| CDY16831 | Canola | plasma membrane | 75.17 | 73.36 |
| EER97506 | Sorghum | extracellular, plasma membrane | 75.17 | 73.36 |
| Os05t0386800-01 | Rice | extracellular | 74.94 | 73.3 |
| CDY02184 | Canola | plasma membrane | 74.72 | 73.09 |
| PGSC0003DMT400082702 | Potato | extracellular | 40.49 | 72.98 |
| Bra012996.1-P | Field mustard | plasma membrane | 74.5 | 72.87 |
| EER90860 | Sorghum | extracellular, golgi, plasma membrane | 73.15 | 72.83 |
| Zm00001d013256_P001 | Maize | extracellular | 73.15 | 72.83 |
| CDY58691 | Canola | plasma membrane | 74.5 | 72.71 |
| Bra035951.1-P | Field mustard | plasma membrane | 74.5 | 72.71 |
| Os07t0604300-01 | Rice | extracellular | 72.48 | 72.65 |
| GSMUA_Achr2P06240_001 | Banana | mitochondrion | 77.18 | 72.33 |
| Os03t0754500-00 | Rice | extracellular | 34.0 | 71.03 |
| Zm00001d034049_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 71.59 | 70.8 |
| TraesCS6D01G364400.1 | Wheat | extracellular | 70.02 | 70.02 |
| Zm00001d022081_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 72.04 | 70.0 |
| TraesCS6B01G418400.1 | Wheat | extracellular | 69.13 | 69.13 |
| TraesCS6A01G379800.1 | Wheat | extracellular | 69.13 | 69.13 |
| TraesCS5D01G401900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 70.25 | 68.71 |
| TraesCS5B01G396900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 70.25 | 68.71 |
| TraesCS5A01G392000.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 70.02 | 68.49 |
| EER90859 | Sorghum | extracellular | 65.1 | 68.47 |
| OQU92393 | Sorghum | extracellular | 70.25 | 68.11 |
| PGSC0003DMT400002674 | Potato | plasma membrane | 65.77 | 67.74 |
| Os03t0416300-01 | Rice | extracellular | 69.35 | 67.69 |
| HORVU5Hr1G095910.12 | Barley | extracellular, vacuole | 69.35 | 67.39 |
| PGSC0003DMT400003723 | Potato | extracellular | 64.88 | 66.82 |
| PGSC0003DMT400063318 | Potato | cytosol | 60.18 | 66.58 |
| TraesCS2A01G175100.1 | Wheat | extracellular | 66.67 | 65.78 |
| TraesCS3A01G409900.1 | Wheat | plastid | 40.27 | 64.98 |
| TraesCS2D01G182500.1 | Wheat | golgi | 66.0 | 64.84 |
| CDY42842 | Canola | cytosol | 17.67 | 64.75 |
| TraesCS4A01G231200.1 | Wheat | extracellular | 66.44 | 64.57 |
| Bra029346.1-P | Field mustard | cytosol, plasma membrane, plastid | 17.67 | 64.23 |
| TraesCS4B01G084800.1 | Wheat | extracellular | 64.88 | 63.74 |
| TraesCS4D01G082700.1 | Wheat | extracellular | 65.55 | 63.56 |
| HORVU4Hr1G014530.1 | Barley | extracellular | 65.55 | 63.28 |
| TraesCS2B01G201500.1 | Wheat | plasma membrane | 64.88 | 63.18 |
| HORVU2Hr1G033070.14 | Barley | mitochondrion | 64.88 | 61.7 |
| PGSC0003DMT400063055 | Potato | extracellular, mitochondrion | 62.42 | 61.32 |
| Os10t0497700-01 | Rice | extracellular | 58.17 | 61.18 |
| KRH56778 | Soybean | extracellular | 28.41 | 60.77 |
| TraesCS3B01G443000.1 | Wheat | cytosol, plasma membrane, vacuole | 55.93 | 59.81 |
| HORVU5Hr1G067940.1 | Barley | plasma membrane, plastid | 61.97 | 58.69 |
| TraesCS5D01G402000.1 | Wheat | extracellular | 29.31 | 57.46 |
| TraesCS5B01G397000.2 | Wheat | extracellular | 28.86 | 56.83 |
| TraesCS3D01G404800.2 | Wheat | plasma membrane | 57.27 | 56.02 |
| HORVU5Hr1G096010.13 | Barley | endoplasmic reticulum | 34.23 | 54.84 |
| PGSC0003DMT400004139 | Potato | extracellular | 19.46 | 42.23 |
| PGSC0003DMT400081003 | Potato | cytosol | 9.17 | 35.34 |
| PGSC0003DMT400002667 | Potato | cytosol, golgi, peroxisome | 10.96 | 31.41 |
| PGSC0003DMT400065836 | Potato | cytosol | 26.4 | 25.16 |
| PGSC0003DMT400002688 | Potato | cytosol | 5.82 | 20.16 |
| PGSC0003DMT400065840 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 28.19 | 19.35 |
| PGSC0003DMT400037398 | Potato | vacuole | 28.41 | 19.16 |
| PGSC0003DMT400002678 | Potato | vacuole | 27.52 | 18.61 |
| PGSC0003DMT400005270 | Potato | cytosol | 27.74 | 17.32 |
Protein Annotations
| MapMan:21.1.2.2 | InterPro:COBRA_pln | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 |
| UniProt:M0ZLR0 | PFAM:PD140986 | PFAM:PF04833 | EnsemblPlantsGene:PGSC0003DMG400001371 | PGSC:PGSC0003DMG400001371 | EnsemblPlants:PGSC0003DMT400003470 |
| PIRSF:PIRSF038122 | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF3 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000294EB79 |
| SEG:seg | : | : | : | : | : |
Description
Protein COBRA [Source:PGSC_GENE;Acc:PGSC0003DMG400001371]
Coordinates
chr2:-:45429122..45434995
Molecular Weight (calculated)
50063.0 Da
IEP (calculated)
8.545
GRAVY (calculated)
-0.135
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLFRFFAST ILVLFLLSSF SFHSTDAFDP LDPNGNITIK WDVISWAPDG YVAVVTMYNF QQYRHIQAPG WSLGWTWAKK EVIWTMMGGQ TTEQGDCSKY
101: KGNIPHCCKK DPTVVDMLPG TPYNQQIANC CKGGVINSWG QDPANAVSSF QISVGAAGTT NKTVRVPKNF TLKAPGPGYT CGPAKIVKPT KFVSADGRRV
201: TQAMMTWNVT CTYSQFLAQK TPTCCVSLSS FYNDTIVPCP TCTCGCQSNG TQRGSCVDPE TPHLASVVSD HGKNNYVPLV QCTKHMCPIR IHWHVKLNYK
301: EYWRVKITIT NFNYRMNYTQ WNLVVQHPNF DNLTTLFSFN YKSLTPYGSI NDTAMLWGVK FYNDLLMQAG PSGNVQSELL FRKDASTFTF EKGWAFPHRI
401: YFNGDNCVMP PPDAYPYLPN AGSRWEVSLI TLVVTLIASM AVVLTYI
101: KGNIPHCCKK DPTVVDMLPG TPYNQQIANC CKGGVINSWG QDPANAVSSF QISVGAAGTT NKTVRVPKNF TLKAPGPGYT CGPAKIVKPT KFVSADGRRV
201: TQAMMTWNVT CTYSQFLAQK TPTCCVSLSS FYNDTIVPCP TCTCGCQSNG TQRGSCVDPE TPHLASVVSD HGKNNYVPLV QCTKHMCPIR IHWHVKLNYK
301: EYWRVKITIT NFNYRMNYTQ WNLVVQHPNF DNLTTLFSFN YKSLTPYGSI NDTAMLWGVK FYNDLLMQAG PSGNVQSELL FRKDASTFTF EKGWAFPHRI
401: YFNGDNCVMP PPDAYPYLPN AGSRWEVSLI TLVVTLIASM AVVLTYI
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.