Factsheet for TraesCS4D01G082700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G231200.1	Wheat	extracellular	97.18	97.39
TraesCS4B01G084800.1	Wheat	extracellular	93.71	94.95
HORVU4Hr1G014530.1	Barley	extracellular	93.49	93.09
Os03t0416300-01	Rice	extracellular	78.74	79.26
OQU92393	Sorghum	extracellular	76.57	76.57
VIT_14s0083g01160.t01	Wine grape	vacuole	64.64	68.35
KRH72178	Soybean	mitochondrion	54.66	68.29
TraesCS2D01G182500.1	Wheat	golgi	65.51	66.37
VIT_17s0000g05070.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	65.51	66.23
KRH54735	Soybean	endoplasmic reticulum	65.08	65.79
TraesCS6D01G364400.1	Wheat	extracellular	63.77	65.77
KRH03165	Soybean	extracellular	64.64	65.64
PGSC0003DMT400003470	Potato	extracellular	63.56	65.55
Solyc02g089120.2.1	Tomato	extracellular	63.56	65.55
Solyc02g065770.2.1	Tomato	extracellular	63.12	65.54
CDX85277	Canola	extracellular	61.82	65.37
CDX86358	Canola	extracellular	61.61	65.14
Bra025406.1-P	Field mustard	extracellular	61.61	65.14
CDY70289	Canola	extracellular	55.75	64.74
KRH45084	Soybean	extracellular, golgi, plasma membrane	62.69	64.51
KRH63181	Soybean	endoplasmic reticulum	63.77	64.47
PGSC0003DMT400068328	Potato	extracellular	62.04	64.41
KRH01360	Soybean	extracellular, golgi, plasma membrane	62.04	63.84
TraesCS5D01G401900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	62.69	63.24
KRG93684	Soybean	extracellular, vacuole	62.26	63.22
KRH18352	Soybean	plasma membrane	62.26	62.66
AT5G60920.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	61.82	62.5
AT3G29810.1	Thale cress	extracellular	59.65	62.36
CDY02184	Canola	plasma membrane	61.39	61.93
CDY16831	Canola	plasma membrane	61.39	61.79
Bra040587.1-P	Field mustard	extracellular	58.79	61.73
Bra012996.1-P	Field mustard	plasma membrane	61.17	61.71
CDX87193	Canola	plasma membrane	60.95	61.62
CDY58691	Canola	plasma membrane	60.95	61.35
Bra035951.1-P	Field mustard	plasma membrane	60.74	61.14
AT3G02210.1	Thale cress	extracellular	59.65	60.84
Bra039163.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	59.87	60.66
CDY60470	Canola	plasma membrane	59.65	60.04
CDY43250	Canola	plasma membrane	59.22	59.74
Bra029346.1-P	Field mustard	cytosol, plasma membrane, plastid	15.62	58.54
CDY42842	Canola	cytosol	15.4	58.2
CDY24004	Canola	cytosol, nucleus, plastid	10.63	57.65
TraesCS5D01G107900.1	Wheat	extracellular	55.31	56.79
TraesCS2D01G182400.1	Wheat	plasma membrane	53.15	54.81
TraesCS3D01G404800.2	Wheat	plasma membrane	53.8	54.27
TraesCS5D01G402000.1	Wheat	extracellular	26.46	53.51
CDY29033	Canola	cytosol	20.82	52.75
TraesCS3D01G047900.1	Wheat	plastid	27.77	51.41
KRH56778	Soybean	extracellular	22.99	50.72
TraesCS2D01G386400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	43.17	45.02
CDY14723	Canola	cytosol	25.6	37.11
TraesCS7D01G136500.1	Wheat	mitochondrion	27.77	18.99
TraesCS4D01G188600.1	Wheat	golgi	27.55	18.87
TraesCS2D01G092100.1	Wheat	plasma membrane	26.25	18.33

Protein Annotations

EnsemblPlants:TraesCS4D01G082700.1	EnsemblPlantsGene:TraesCS4D01G082700	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31673	PANTHER:PTHR31673:SF21	PFAM:PD140986	PFAM:PF04833	PIRSF:PIRSF038122	SEG:seg
SignalP:SignalP-noTM	TMHMM:TMhelix	MapMan:21.1.2.2	:	:	:

Description

No Description!

Coordinates

chr4D:+:56706748..56709831

Molecular Weight (calculated)

51063.4 Da

IEP (calculated)

8.868

GRAVY (calculated)

-0.131

Length

461 amino acids

Sequence
(BLAST)

001: MAATSLLRMR LCAALALLLL LVGAVPSTEA YDPLDPTGNI TIKWDITQWT ADGYIAVVSI NNYQKYRHIQ APGWHLGWAW TKKEVIWGMM GAQTIEQGDC
101: SQFKGNIPHC CRRDPTTVDL LPGAPNGMQV GNCCKGGVLS SWVQDPVNAV ASFQITVGRS GTSNRTVKAP KNFTLKAPGP GYTCGAAQKV KPPTKFISPD
201: GRRTTQAHVT WDVICTYSQF VAQRGPACCV ALSSFYNETI VDCPKCSCGC QNNITNPGSC VEVNSPYLAS VVNGPGKGSS TPLVRCSPHM CPIKVHWHVK
301: ANYRDYWRVK ITISNWNYRT NYSQWNLVVQ HPNFDNVTTI FSFNYKALNP YGVINDTAML WGLKYYNDLL MVAGPNGNVQ SELLFRKDPS TFTFEKGWGF
401: PRRIYFNGES CVMPQPDLYP WLPSSSPRLT KTAFLALAIV ACAMVAFLYN HLVLDKYCGK S

Best Arabidopsis Sequence Match ( AT3G02210.1 )
(BLAST)

001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL

Arabidopsis Description

COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.