Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 4
- extracellular 4
- vacuole 3
- plasma membrane 4
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02184 | Canola | plasma membrane | 93.86 | 93.65 |
| CDY58691 | Canola | plasma membrane | 93.86 | 93.45 |
| Bra012996.1-P | Field mustard | plasma membrane | 93.64 | 93.44 |
| CDX87193 | Canola | plasma membrane | 92.76 | 92.76 |
| CDY16831 | Canola | plasma membrane | 92.98 | 92.58 |
| Bra035951.1-P | Field mustard | plasma membrane | 92.32 | 91.92 |
| Bra029346.1-P | Field mustard | cytosol, plasma membrane, plastid | 23.46 | 86.99 |
| CDY42842 | Canola | cytosol | 21.27 | 79.51 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 77.63 | 77.63 |
| Solyc02g089120.2.1 | Tomato | extracellular | 75.44 | 76.96 |
| PGSC0003DMT400068328 | Potato | extracellular | 74.78 | 76.8 |
| Solyc02g065770.2.1 | Tomato | extracellular | 74.56 | 76.58 |
| PGSC0003DMT400003470 | Potato | extracellular | 75.0 | 76.51 |
| GSMUA_Achr4P01440_001 | Banana | extracellular, plasma membrane | 75.66 | 75.49 |
| KRH54735 | Soybean | endoplasmic reticulum | 75.22 | 75.22 |
| GSMUA_Achr1P24500_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 75.44 | 75.11 |
| KRH63181 | Soybean | endoplasmic reticulum | 74.78 | 74.78 |
| Zm00001d031479_P001 | Maize | cytosol, mitochondrion | 26.75 | 74.39 |
| KRH03165 | Soybean | extracellular | 73.68 | 74.01 |
| Os03t0754500-00 | Rice | extracellular | 33.33 | 71.03 |
| AT3G29810.1 | Thale cress | extracellular | 68.42 | 70.75 |
| Zm00001d013256_P001 | Maize | extracellular | 68.86 | 69.93 |
| Os05t0386800-01 | Rice | extracellular | 69.96 | 69.8 |
| AT3G02210.1 | Thale cress | extracellular | 69.08 | 69.69 |
| EER90860 | Sorghum | extracellular, golgi, plasma membrane | 68.42 | 69.49 |
| Os07t0604300-01 | Rice | extracellular | 67.76 | 69.28 |
| Zm00001d034049_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 68.42 | 69.03 |
| GSMUA_Achr2P06240_001 | Banana | mitochondrion | 71.93 | 68.76 |
| AT5G15630.1 | Thale cress | extracellular, plasma membrane, vacuole | 63.38 | 67.05 |
| EER97506 | Sorghum | extracellular, plasma membrane | 67.32 | 67.03 |
| TraesCS6D01G364400.1 | Wheat | extracellular | 65.35 | 66.67 |
| TraesCS6A01G379800.1 | Wheat | extracellular | 65.13 | 66.44 |
| TraesCS6B01G418400.1 | Wheat | extracellular | 64.91 | 66.22 |
| EER90859 | Sorghum | extracellular | 61.62 | 66.12 |
| TraesCS5A01G392000.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 65.13 | 64.99 |
| TraesCS5D01G401900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 65.13 | 64.99 |
| TraesCS5B01G396900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 64.91 | 64.77 |
| OQU92393 | Sorghum | extracellular | 65.13 | 64.43 |
| HORVU5Hr1G095910.12 | Barley | extracellular, vacuole | 64.69 | 64.13 |
| Zm00001d022081_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 64.69 | 64.13 |
| Os03t0416300-01 | Rice | extracellular | 63.6 | 63.32 |
| TraesCS4A01G231200.1 | Wheat | extracellular | 62.5 | 61.96 |
| TraesCS4D01G082700.1 | Wheat | extracellular | 62.5 | 61.82 |
| TraesCS3A01G409900.1 | Wheat | plastid | 37.28 | 61.37 |
| HORVU4Hr1G014530.1 | Barley | extracellular | 62.28 | 61.34 |
| TraesCS4B01G084800.1 | Wheat | extracellular | 60.96 | 61.1 |
| TraesCS2A01G175100.1 | Wheat | extracellular | 60.31 | 60.71 |
| TraesCS2D01G182500.1 | Wheat | golgi | 60.09 | 60.22 |
| Os10t0497700-01 | Rice | extracellular | 54.82 | 58.82 |
| HORVU2Hr1G033070.14 | Barley | mitochondrion | 60.53 | 58.72 |
| TraesCS2B01G201500.1 | Wheat | plasma membrane | 58.99 | 58.61 |
| KRH56778 | Soybean | extracellular | 26.75 | 58.37 |
| AT5G60950.1 | Thale cress | endoplasmic reticulum | 25.88 | 57.84 |
| TraesCS3B01G443000.1 | Wheat | cytosol, plasma membrane, vacuole | 51.75 | 56.46 |
| HORVU5Hr1G067940.1 | Barley | plasma membrane, plastid | 57.89 | 55.93 |
| TraesCS5D01G402000.1 | Wheat | extracellular | 27.41 | 54.82 |
| TraesCS5B01G397000.2 | Wheat | extracellular | 26.97 | 54.19 |
| HORVU5Hr1G096010.13 | Barley | endoplasmic reticulum | 32.68 | 53.41 |
| TraesCS3D01G404800.2 | Wheat | plasma membrane | 53.29 | 53.17 |
| AT1G09790.1 | Thale cress | plasma membrane | 48.68 | 48.9 |
| AT4G16120.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 26.75 | 18.46 |
| AT5G49270.1 | Thale cress | extracellular, plasma membrane, vacuole | 26.75 | 18.4 |
| AT4G27110.1 | Thale cress | extracellular | 25.66 | 17.52 |
| AT3G16860.1 | Thale cress | plasma membrane | 24.34 | 17.0 |
| AT3G20580.1 | Thale cress | endoplasmic reticulum, vacuole | 24.12 | 16.37 |
Protein Annotations
| MapMan:21.1.2.2 | EntrezGene:836213 | UniProt:A0A178UFZ7 | ProteinID:AAK56072.1 | ProteinID:AED97397.1 | EMBL:AJ006787 |
| ProteinID:ANM69242.1 | ArrayExpress:AT5G60920 | EnsemblPlantsGene:AT5G60920 | RefSeq:AT5G60920 | TAIR:AT5G60920 | RefSeq:AT5G60920-TAIR-G |
| EnsemblPlants:AT5G60920.1 | TAIR:AT5G60920.1 | EMBL:AY085712 | EMBL:AY094402 | ProteinID:BAB10641.1 | EMBL:BT001119 |
| Symbol:COB | InterPro:COBRA_pln | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009505 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009825 |
| GO:GO:0009897 | GO:GO:0009930 | GO:GO:0009987 | GO:GO:0010215 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0016328 | GO:GO:0030312 | GO:GO:0031225 | GO:GO:0040007 |
| GO:GO:0046658 | RefSeq:NP_001330939.1 | RefSeq:NP_568930.1 | ProteinID:OAO92032.1 | PFAM:PD140986 | PFAM:PF04833 |
| PIRSF:PIRSF038122 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025181 | PO:PO:0025281 | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF3 | UniProt:Q94KT8 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI00000AC3CC | SEG:seg | : | : | : |
Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
Coordinates
chr5:-:24511152..24514338
Molecular Weight (calculated)
51205.2 Da
IEP (calculated)
8.719
GRAVY (calculated)
-0.167
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.