Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G401900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 99.78 | 99.78 |
| TraesCS5A01G392000.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 99.34 | 99.34 |
| HORVU5Hr1G095910.12 | Barley | extracellular, vacuole | 87.97 | 87.39 |
| Zm00001d013256_P001 | Maize | extracellular | 83.15 | 84.63 |
| EER90860 | Sorghum | extracellular, golgi, plasma membrane | 82.71 | 84.19 |
| TraesCS6B01G418400.1 | Wheat | extracellular | 81.4 | 83.22 |
| Zm00001d034049_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 82.28 | 83.19 |
| Zm00001d031479_P001 | Maize | cytosol, mitochondrion | 29.54 | 82.32 |
| TraesCS5B01G397000.2 | Wheat | extracellular | 37.2 | 74.89 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 73.09 | 73.25 |
| VIT_14s0083g01160.t01 | Wine grape | vacuole | 69.8 | 73.17 |
| Solyc02g065770.2.1 | Tomato | extracellular | 70.46 | 72.52 |
| PGSC0003DMT400068328 | Potato | extracellular | 70.02 | 72.07 |
| GSMUA_Achr4P01440_001 | Banana | extracellular, plasma membrane | 71.77 | 71.77 |
| GSMUA_Achr1P24500_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 71.12 | 70.96 |
| KRH72178 | Soybean | mitochondrion | 56.89 | 70.46 |
| Solyc02g089120.2.1 | Tomato | extracellular | 68.71 | 70.25 |
| PGSC0003DMT400003470 | Potato | extracellular | 68.71 | 70.25 |
| KRH01360 | Soybean | extracellular, golgi, plasma membrane | 68.71 | 70.09 |
| CDY70289 | Canola | extracellular | 60.61 | 69.77 |
| KRH45084 | Soybean | extracellular, golgi, plasma membrane | 67.61 | 68.97 |
| KRH63181 | Soybean | endoplasmic reticulum | 68.71 | 68.86 |
| Bra025406.1-P | Field mustard | extracellular | 65.65 | 68.81 |
| CDX85277 | Canola | extracellular | 65.65 | 68.81 |
| CDX86358 | Canola | extracellular | 65.65 | 68.81 |
| KRH54735 | Soybean | endoplasmic reticulum | 68.27 | 68.42 |
| Bra040587.1-P | Field mustard | extracellular | 64.99 | 67.65 |
| GSMUA_Achr2P06240_001 | Banana | mitochondrion | 70.46 | 67.51 |
| KRG93684 | Soybean | extracellular, vacuole | 66.96 | 67.4 |
| KRH03165 | Soybean | extracellular | 66.96 | 67.4 |
| AT3G29810.1 | Thale cress | extracellular | 64.33 | 66.67 |
| CDX87193 | Canola | plasma membrane | 65.65 | 65.79 |
| CDY16831 | Canola | plasma membrane | 65.86 | 65.72 |
| KRH18352 | Soybean | plasma membrane | 65.65 | 65.5 |
| CDY58691 | Canola | plasma membrane | 65.43 | 65.28 |
| CDY02184 | Canola | plasma membrane | 65.21 | 65.21 |
| Bra035951.1-P | Field mustard | plasma membrane | 65.21 | 65.07 |
| Bra012996.1-P | Field mustard | plasma membrane | 64.99 | 64.99 |
| AT5G60920.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 64.77 | 64.91 |
| Os10t0497700-01 | Rice | extracellular | 60.18 | 64.71 |
| AT3G02210.1 | Thale cress | extracellular | 63.46 | 64.16 |
| CDY60470 | Canola | plasma membrane | 63.24 | 63.1 |
| Bra039163.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 62.8 | 63.08 |
| TraesCS5B01G101400.1 | Wheat | extracellular | 61.93 | 62.89 |
| TraesCS4B01G084800.1 | Wheat | extracellular | 62.58 | 62.86 |
| CDY43250 | Canola | plasma membrane | 62.8 | 62.8 |
| TraesCS2B01G201400.1 | Wheat | plasma membrane | 59.74 | 60.94 |
| CDY42842 | Canola | cytosol | 16.19 | 60.66 |
| TraesCS2B01G201500.1 | Wheat | plasma membrane | 60.18 | 59.91 |
| Bra029346.1-P | Field mustard | cytosol, plasma membrane, plastid | 15.75 | 58.54 |
| KRH56778 | Soybean | extracellular | 26.48 | 57.89 |
| CDY24004 | Canola | cytosol, nucleus, plastid | 10.72 | 57.65 |
| TraesCS3B01G443000.1 | Wheat | cytosol, plasma membrane, vacuole | 52.3 | 57.18 |
| CDY29033 | Canola | cytosol | 21.44 | 53.85 |
| TraesCS6B01G361700.1 | Wheat | plastid | 21.88 | 45.25 |
| TraesCS6B01G185800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 38.51 | 42.41 |
| TraesCS2B01G406700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 37.2 | 39.63 |
| CDY14723 | Canola | cytosol | 26.48 | 38.05 |
| TraesCS4B01G187300.1 | Wheat | golgi | 27.79 | 19.04 |
| TraesCS2B01G107700.1 | Wheat | plasma membrane | 25.6 | 17.75 |
| TraesCS7B01G037700.1 | Wheat | mitochondrion | 26.04 | 17.66 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G396900.1 | EnsemblPlantsGene:TraesCS5B01G396900 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 | InterPro:COBRA_pln |
| PANTHER:PTHR31673 | PANTHER:PTHR31673:SF3 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 | SEG:seg |
| SignalP:SignalP-noTM | MapMan:21.1.2.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:574675521..574678336
Molecular Weight (calculated)
50843.7 Da
IEP (calculated)
8.767
GRAVY (calculated)
-0.220
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPVGGVAGS SRSAACCAVL LAAVLFFSAP ATTEAYDSLD PNGNITIKWD IISWTPDGYV ATVTMFNYQQ FRHIPAPGWQ LGWSWAKKEV IWSMVGAQAT
101: EQGDCSKFKS APPHCCKRDP TIVDLLPGTP FNQQIANCCK AGVIKTFNQD PGNAASSFQI SVGLAGTTNK TVKMPKNFTL RAPGPGYTCG RALVGRPTKY
201: YSSDGRRVTQ ALMSWNVTCT YSQFLAQKTP TCCVSLSSFY NDTIVNCPTC SCGCQNNITR PGSCVNDNSP YLQSAINGPG KLTGQPLVQC TSHMCPIRIH
301: WHVKLNYKDY WRVKVTITNF NYRMNYTDWN MVAQHPNFDN ITKLFSFNYK PLTPYGGRIN DTAMFWGMKF YNDLLNQAGP LGNAQSELLM RKDSETFTFQ
401: KGWAFPRRVY FNGDNCVMPS PDDYPWLPSA SPLTKQPWTL PLLVFWTAMA TLLAYYV
101: EQGDCSKFKS APPHCCKRDP TIVDLLPGTP FNQQIANCCK AGVIKTFNQD PGNAASSFQI SVGLAGTTNK TVKMPKNFTL RAPGPGYTCG RALVGRPTKY
201: YSSDGRRVTQ ALMSWNVTCT YSQFLAQKTP TCCVSLSSFY NDTIVNCPTC SCGCQNNITR PGSCVNDNSP YLQSAINGPG KLTGQPLVQC TSHMCPIRIH
301: WHVKLNYKDY WRVKVTITNF NYRMNYTDWN MVAQHPNFDN ITKLFSFNYK PLTPYGGRIN DTAMFWGMKF YNDLLNQAGP LGNAQSELLM RKDSETFTFQ
401: KGWAFPRRVY FNGDNCVMPS PDDYPWLPSA SPLTKQPWTL PLLVFWTAMA TLLAYYV
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.