Factsheet for TraesCS2B01G406700.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G386400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	80.19	77.83
TraesCS2A01G388600.1	Wheat	extracellular, plasma membrane	67.13	77.21
Os04t0540300-00	Rice	plasma membrane	58.74	57.4
TraesCS6B01G361700.1	Wheat	plastid	27.51	53.39
Zm00001d002803_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	52.45	51.61
KXG26803	Sorghum	extracellular, plasma membrane	53.15	51.01
GSMUA_Achr4P27070_001	Banana	cytosol	47.32	49.03
VIT_12s0035g00630.t01	Wine grape	extracellular, plasma membrane	43.59	43.39
Solyc01g103860.2.1	Tomato	cytosol	42.19	42.79
TraesCS6B01G185800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	40.33	41.69
Bra030800.1-P	Field mustard	cytosol	39.16	40.29
TraesCS6B01G418400.1	Wheat	extracellular	41.72	40.04
CDX93481	Canola	plasma membrane	40.56	39.64
AT1G09790.1	Thale cress	plasma membrane	41.49	39.21
TraesCS2B01G201500.1	Wheat	plasma membrane	41.26	38.56
Bra019992.1-P	Field mustard	cytosol	35.66	38.54
CDY31063	Canola	plasma membrane	38.93	38.48
TraesCS5B01G101400.1	Wheat	extracellular	40.09	38.22
TraesCS2B01G201400.1	Wheat	plasma membrane	39.39	37.72
TraesCS3B01G443000.1	Wheat	cytosol, plasma membrane, vacuole	36.6	37.56
TraesCS5B01G396900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	39.63	37.2
CDY20671	Canola	extracellular, plasma membrane, vacuole	39.39	37.14
TraesCS4B01G084800.1	Wheat	extracellular	38.69	36.48
HORVU2Hr1G092510.1	Barley	mitochondrion	22.61	30.31
CDX94950	Canola	nucleus	37.06	27.89
TraesCS5B01G397000.2	Wheat	extracellular	11.42	21.59
TraesCS2B01G107700.1	Wheat	plasma membrane	20.98	13.66
TraesCS4B01G187300.1	Wheat	golgi	19.58	12.59
TraesCS7B01G037700.1	Wheat	mitochondrion	19.35	12.31

Protein Annotations

EnsemblPlants:TraesCS2B01G406700.1	EnsemblPlantsGene:TraesCS2B01G406700	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31673	PANTHER:PTHR31673:SF12	PFAM:PD140986	PFAM:PF04833	PIRSF:PIRSF038122	SEG:seg
SignalP:SignalP-noTM	MapMan:21.1.2.2	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:575934789..575936567

Molecular Weight (calculated)

48789.8 Da

IEP (calculated)

8.481

GRAVY (calculated)

-0.375

Length

429 amino acids

Sequence
(BLAST)

001: MAREQFVLFI FICCLSSRFA DAYDPVDPNG NITINWDFPS IEPNVYAVKV SIHNYQLYRH IERPGWRLSW VWAGHEFISD VIGAETTERG NCTLLREATG
101: HGGPAAGRAV QQAVRQLLPW RRALVRHAEQ QDGHLAVRDV HSQFRARRAR RPQDADHLQH RRAGLHLQQR HQRAGDEVQG RRAAPRTRTW QIICSYSQFR
201: DAPSPSCCVS LTTFYNNTIV GCPRDSCGGA NSPSAHQCLS GGEQSKVLAA LPDADGAPPV PVIRCTEHMC PIRVHWHVKQ SYRGYWRVKT TVTNYDVVSN
301: YTDWNLVVQH PNLRSLTQLF SFNYQPLIQY GTINDTGVFW GIKNYNEMLL RDGNVQTEMI LEKDPSDFTF SGGWAFPRRV YFNGHECVMP PPDQYPSLPN
401: AAWDVRVSAV QRWLVAGSCL LSLSMLFLV

Best Arabidopsis Sequence Match ( AT1G09790.1 )
(BLAST)

001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV

Arabidopsis Description

COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.