Factsheet for TraesCS2A01G388600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G386400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	95.71	80.77
TraesCS2B01G406700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	77.21	67.13
Os04t0540300-00	Rice	plasma membrane	69.17	58.77
TraesCS6A01G158000.1	Wheat	endoplasmic reticulum	51.21	54.89
KXG26803	Sorghum	extracellular, plasma membrane	65.42	54.59
Zm00001d002803_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	62.47	53.44
GSMUA_Achr4P27070_001	Banana	cytosol	56.3	50.72
HORVU2Hr1G092510.1	Barley	mitochondrion	41.82	48.75
TraesCS6A01G330900.1	Wheat	extracellular, plasma membrane	52.81	47.36
Solyc01g103860.2.1	Tomato	cytosol	50.4	44.44
Bra030800.1-P	Field mustard	cytosol	48.26	43.17
VIT_12s0035g00630.t01	Wine grape	extracellular, plasma membrane	49.87	43.16
CDX93481	Canola	plasma membrane	48.79	41.46
CDY31063	Canola	plasma membrane	47.99	41.24
TraesCS5A01G095200.1	Wheat	extracellular	48.79	40.53
TraesCS6A01G379800.1	Wheat	extracellular	48.53	40.49
CDY20671	Canola	extracellular, plasma membrane, vacuole	49.33	40.44
AT1G09790.1	Thale cress	plasma membrane	49.06	40.31
Bra019992.1-P	Field mustard	cytosol	42.9	40.3
TraesCS2A01G175100.1	Wheat	extracellular	48.53	39.96
TraesCS2A01G175000.1	Wheat	plasma membrane	46.92	38.98
TraesCS3A01G409900.1	Wheat	plastid	28.15	37.91
TraesCS5A01G392000.1	Wheat	endoplasmic reticulum, extracellular, golgi	46.38	37.86
TraesCS4A01G231200.1	Wheat	extracellular	45.31	36.74
CDX94950	Canola	nucleus	44.5	29.12
TraesCS4A01G117100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	23.32	12.93
TraesCS2A01G092900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	23.86	12.86
TraesCS7A01G136600.1	Wheat	mitochondrion	22.52	12.46

Protein Annotations

EnsemblPlants:TraesCS2A01G388600.1	EnsemblPlantsGene:TraesCS2A01G388600	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31673	PANTHER:PTHR31673:SF12	PFAM:PD140986	PFAM:PF04833	PIRSF:PIRSF038122	SEG:seg
SignalP:SignalP-noTM	MapMan:21.1.2.2	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:635930456..635932265

Molecular Weight (calculated)

41986.0 Da

IEP (calculated)

6.568

GRAVY (calculated)

-0.185

Length

373 amino acids

Sequence
(BLAST)

001: MAMEQFVLFI FMCCLSSRFA DAYDPVDPNG NITINWDFPS IEPNVYAVKV SIHNYQLYRH IERPGWRLSW VWAGHEFIST VIGAETTEQG NCTGRHGANG
101: APPHCCEKQP VMMDLLPGAP YNRQSANCCR GGVLSSVTQN NRTATSQFEM YITNFALDEH GDPKMPTTFS IGVPGYTCSN ATNVPATRSK VLAALPDADG
201: APPVPVIRCT EHMCPIRVHW HVKQSYRGYW RVKVAVTNYD VVSNYTDWNL VVQHPNLRSL TQLFSFNYQP LIQYGTINDT GMFWGIKNYN EMLLGDGNVQ
301: TEMILEKDPS DFTFSGGWAF PRRVYFNGHE CVMPPPDQYP SLPNAAWDVR VSAVQRWLVA GSCLLSLSML FLV

Best Arabidopsis Sequence Match ( AT1G09790.2 )
(BLAST)

001: MGAMLNLLLV VTVILCSILS PTHGYDPLDP FGKIIIKWDL LLSSPGQHHV QVTLENMQEY RHVEKPGWKL SWHWLNQEVI WDMKGAETTE QGNCSAFASS
101: GNLPHCCLER PTIVDLLPGA SLNVQVANCC RGGVLTSMSQ DHANHVSAFH MTVGSSPDGP EEFNMPSNFD IGVPGYSCDN ATSVSPTKFS TDKGRRKTQA
201: LATWEAVCVY SQFRSSPSPK CCVSLSAFYY QNIVPCPTCS CGCSSSHCVK DGELPPYLEQ KHDPDEEVSP VVKCSDHMCP IRIHWHVKVN YREYWRVKIT
301: ATNFNTMKNY TNWNLVVLHP NLKSVQQVFS FNYKSLTPYQ NSINDTGMFW GVQFYNDVLL QEGKIGNVQT ELLLKKDMGN FTFREGWAFP RRILFNGDEC
401: VMPSPDDFPR LPKSAHSSSS SSAVISSVSV VFCFLLHHLL LLV

Arabidopsis Description

COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.