Factsheet for TraesCS6A01G158000.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 1
endoplasmic reticulum 4
extracellular 3
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G185800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	87.64	73.49
TraesCS6A01G330900.1	Wheat	extracellular, plasma membrane	64.08	53.61
TraesCS2A01G388600.1	Wheat	extracellular, plasma membrane	54.89	51.21
GSMUA_Achr4P27070_001	Banana	cytosol	49.14	41.3
Bra030800.1-P	Field mustard	cytosol	46.26	38.61
VIT_12s0035g00630.t01	Wine grape	extracellular, plasma membrane	47.41	38.28
Bra019992.1-P	Field mustard	cytosol	43.39	38.04
CDY31063	Canola	plasma membrane	47.13	37.79
Solyc01g103860.2.1	Tomato	cytosol	45.69	37.59
CDX93481	Canola	plasma membrane	46.26	36.67
AT1G09790.1	Thale cress	plasma membrane	47.41	36.34
CDY20671	Canola	extracellular, plasma membrane, vacuole	47.13	36.04
TraesCS6A01G379800.1	Wheat	extracellular	44.83	34.9
TraesCS2A01G175100.1	Wheat	extracellular	45.11	34.66
TraesCS3A01G409900.1	Wheat	plastid	27.59	34.66
TraesCS2A01G175000.1	Wheat	plasma membrane	43.68	33.85
TraesCS5A01G392000.1	Wheat	endoplasmic reticulum, extracellular, golgi	44.25	33.7
TraesCS4A01G231200.1	Wheat	extracellular	43.97	33.26
TraesCS5A01G095200.1	Wheat	extracellular	42.82	33.18
CDX94950	Canola	nucleus	45.98	28.07
TraesCS4A01G117100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	25.29	13.08
TraesCS7A01G136600.1	Wheat	mitochondrion	25.0	12.91
TraesCS2A01G092900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	23.85	11.99

Protein Annotations

EnsemblPlants:TraesCS6A01G158000.1	EnsemblPlantsGene:TraesCS6A01G158000	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31673	PANTHER:PTHR31673:SF12	PFAM:PD140986	PFAM:PF04833	PIRSF:PIRSF038122	SEG:seg
MapMan:21.1.2.2	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:147947910..147968883

Molecular Weight (calculated)

39007.8 Da

IEP (calculated)

6.909

GRAVY (calculated)

-0.092

Length

348 amino acids

Sequence
(BLAST)

001: MLSSVYLLNS SLAYSNIEIN ELTIIYIFFT QVSVSLQNYQ LYRHLEDPGW RLSWFWAGDE VILDAKGAEA TEQGNCTRFV GAHSCEKRPV MKDLGPGVPY
101: NLQVANCCRG GVLSSVMQNS KAATSTFMMT VGNFAPSSDG SPQMPFNFSI GVPGYTCSNA TVVGYDAITV TSMAPQCKGP KAEPAVRCTG HMCPIQVHWH
201: IKKSYREYWR VKMTVNNFNT LKNFSDWNLL VQHPGMQNLT KVFSFNHHPL VQYGTINDTE LFWGLPNFNT RLLQDGYVQS EILPRKDQDF TFDAGWAFLI
301: RKMYLDGGEC AMPPPDDYPP LPSASCDQRL SAVLRSLLAG LVLLFLLF

Best Arabidopsis Sequence Match ( AT1G09790.1 )
(BLAST)

001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV

Arabidopsis Description

COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.