Factsheet for VIT_12s0035g00630.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 2
plasma membrane 6
extracellular 4
endoplasmic reticulum 3
vacuole 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103860.2.1	Tomato	cytosol	60.09	61.23
GSMUA_Achr4P27070_001	Banana	cytosol	54.76	57.0
Bra030800.1-P	Field mustard	cytosol	53.13	54.92
Bra019992.1-P	Field mustard	cytosol	50.58	54.91
CDX93481	Canola	plasma membrane	55.22	54.21
CDY31063	Canola	plasma membrane	54.29	53.92
AT1G09790.1	Thale cress	plasma membrane	55.68	52.86
VIT_14s0083g01160.t01	Wine grape	vacuole	51.97	51.38
Os04t0540300-00	Rice	plasma membrane	52.2	51.25
CDY20671	Canola	extracellular, plasma membrane, vacuole	53.83	50.99
Zm00001d002803_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	51.04	50.46
TraesCS2D01G386400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	51.74	50.45
TraesCS2A01G388600.1	Wheat	extracellular, plasma membrane	43.16	49.87
KXG26803	Sorghum	extracellular, plasma membrane	51.04	49.22
VIT_17s0000g05070.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	51.97	49.12
TraesCS6B01G361700.1	Wheat	plastid	24.59	47.96
VIT_14s0083g01150.t01	Wine grape	plasma membrane	47.8	47.8
TraesCS6A01G158000.1	Wheat	endoplasmic reticulum	38.28	47.41
TraesCS6A01G330900.1	Wheat	extracellular, plasma membrane	45.71	47.36
TraesCS6B01G185800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	45.01	46.75
VIT_03s0038g01430.t01	Wine grape	mitochondrion	17.87	46.67
TraesCS2B01G406700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	43.39	43.59
VIT_17s0000g05050.t01	Wine grape	cytosol	6.03	43.33
VIT_03s0038g01420.t01	Wine grape	extracellular, plasma membrane	23.43	40.4
CDX94950	Canola	nucleus	51.97	39.3
HORVU2Hr1G092510.1	Barley	mitochondrion	19.95	26.88
VIT_17s0000g05060.t01	Wine grape	plasma membrane	48.96	22.66
VIT_05s0077g01470.t01	Wine grape	plasma membrane	28.77	19.05
VIT_19s0177g00160.t01	Wine grape	plasma membrane	27.61	18.17
VIT_07s0005g01020.t01	Wine grape	plasma membrane	27.15	18.08
VIT_10s0116g00620.t01	Wine grape	extracellular	25.52	16.82

Protein Annotations

EntrezGene:100267982	wikigene:100267982	MapMan:21.1.2.2	ProteinID:CBI29736	ProteinID:CBI29736.3	InterPro:CBM2/CBM3_carb-bd_dom_sf
InterPro:COBRA_pln	UniProt:D7TGW4	EMBL:FN595990	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049
GO:GO:0030246	GO:GO:0031225	GO:GO:0040007	EntrezGene:LOC100267982	wikigene:LOC100267982	PFAM:PD140986
PFAM:PF04833	PIRSF:PIRSF038122	PANTHER:PTHR31673	PANTHER:PTHR31673:SF12	SUPFAM:SSF49384	SignalP:SignalP-noTM
UniParc:UPI0001BE381B	ArrayExpress:VIT_12s0035g00630	EnsemblPlantsGene:VIT_12s0035g00630	EnsemblPlants:VIT_12s0035g00630.t01	unigene:Vvi.20430	RefSeq:XP_002264330
RefSeq:XP_002264330.1	SEG:seg	:	:	:	:

Description

COBRA-like protein [Source:UniProtKB/TrEMBL;Acc:D7TGW4]

Coordinates

chr12:-:20045656..20050440

Molecular Weight (calculated)

48350.8 Da

IEP (calculated)

6.401

GRAVY (calculated)

-0.199

Length

431 amino acids

Sequence
(BLAST)

001: MGWSWILIIQ LNFLIGNADG YDPLDPNGNI AIKWDVLQWS SSSYDARVSI INYQLYRHIE TPGWKLSWTW PGDEVIWDMW GALAHEQGNC SEFKGEQLPY
101: CCEKTPLILD RGPGTPFNKQ VANCCRDGLL TSMIQDPSKH GAMFQMNVGT ASSNVSDMTM PRNFSLGVPG YTCGDPFQVP PSRFPEEGGR RWTQALMTWN
201: VSCSYSQFLA STAPTCCVSL SAFYNSTIVP CPQCSCGCEG IPGTKCAKPG ETPLLLPQGD GQQPDLVRCS RHMCPIRVHW HVKTSYREYW RVKITVTNLN
301: LVKNYSAWNL VVLHPNLQSI TQVFSFNYRS LNEHGTINDT GMFWGIQYYN ELLLQAGESG NVQTEMLLHK DPGIFTFREG WAFPRKISFN GDQCVMPSPD
401: EYPRLPNTGP SATPPSLCII LLLSLSVIVM L

Best Arabidopsis Sequence Match ( AT1G09790.1 )
(BLAST)

001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV

Arabidopsis Description

COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.