Factsheet for TraesCS6B01G185800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G158000.1	Wheat	endoplasmic reticulum	73.49	87.64
TraesCS6B01G361700.1	Wheat	plastid	33.98	63.8
GSMUA_Achr4P27070_001	Banana	cytosol	49.4	49.52
VIT_12s0035g00630.t01	Wine grape	extracellular, plasma membrane	46.75	45.01
Solyc01g103860.2.1	Tomato	cytosol	45.78	44.92
Bra030800.1-P	Field mustard	cytosol	44.58	44.36
Bra019992.1-P	Field mustard	cytosol	41.93	43.83
CDY31063	Canola	plasma membrane	45.3	43.32
CDX93481	Canola	plasma membrane	45.06	42.6
CDY20671	Canola	extracellular, plasma membrane, vacuole	45.78	41.76
AT1G09790.1	Thale cress	plasma membrane	45.54	41.63
TraesCS2B01G406700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	41.69	40.33
TraesCS6B01G418400.1	Wheat	extracellular	42.89	39.82
TraesCS2B01G201400.1	Wheat	plasma membrane	42.65	39.51
TraesCS3B01G443000.1	Wheat	cytosol, plasma membrane, vacuole	39.76	39.47
TraesCS2B01G201500.1	Wheat	plasma membrane	43.13	39.0
TraesCS5B01G101400.1	Wheat	extracellular	41.93	38.67
TraesCS5B01G396900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	42.41	38.51
TraesCS4B01G084800.1	Wheat	extracellular	41.69	38.02
CDX94950	Canola	nucleus	44.1	32.11
TraesCS5B01G397000.2	Wheat	extracellular	15.66	28.63
TraesCS7B01G037700.1	Wheat	mitochondrion	25.54	15.73
TraesCS2B01G107700.1	Wheat	plasma membrane	24.34	15.33
TraesCS4B01G187300.1	Wheat	golgi	24.58	15.29

Protein Annotations

EnsemblPlants:TraesCS6B01G185800.1	EnsemblPlantsGene:TraesCS6B01G185800	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31673	PANTHER:PTHR31673:SF12	PFAM:PD140986	PFAM:PF04833	PIRSF:PIRSF038122	SEG:seg
MapMan:21.1.2.2	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:211683500..211691303

Molecular Weight (calculated)

46303.7 Da

IEP (calculated)

7.831

GRAVY (calculated)

-0.113

Length

415 amino acids

Sequence
(BLAST)

001: MPPDPAPFRG RLRPALFTVD ILNRSCLEYI KITGTTLSES AGSNPVSVSL QNYQLYRHLE DPGWRLSWFW AGDEVILDAT GAEATEQGNC TRFVGAHSCE
101: KRPVMMDLGP GTPYNLQVAN CCRGGVLSSL VQNSKAATST FRMIVGNFAP SSDGGPQMPF NFSIGVPGYT CSNATVVPPS RTQFDKQRHI QALMTWQVLC
201: FYSQTVAAPR KSCCVSLFMF YSSVVVECPR CICGACPVTS MAPQCKGPKA EPAARCTGHM CPIQVHWHIK KSYREYWRVK MTVNNFNTLK NFSDWNFLVQ
301: HPGMQNLTEV FSFNHHPLVQ YGTINDTELF WGLPNFNTML LQDGYVQSEI LLRKGQDFTF DAGWAFPRKM YFDGGECAMP PPDDYPPLPS ASCDQRLSAV
401: LRSLLAGLVL LFLLF

Best Arabidopsis Sequence Match ( AT1G09790.1 )
(BLAST)

001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV

Arabidopsis Description

COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.