Factsheet for Bra019992.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93481	Canola	plasma membrane	94.21	85.19
Bra030800.1-P	Field mustard	cytosol	76.83	73.14
AT1G09790.1	Thale cress	plasma membrane	81.11	70.93
Solyc01g103860.2.1	Tomato	cytosol	55.42	52.01
VIT_12s0035g00630.t01	Wine grape	extracellular, plasma membrane	54.91	50.58
Bra029346.1-P	Field mustard	cytosol, plasma membrane, plastid	15.62	50.41
GSMUA_Achr4P27070_001	Banana	cytosol	52.14	50.0
Bra025406.1-P	Field mustard	extracellular	50.63	46.1
TraesCS6B01G361700.1	Wheat	plastid	24.94	44.8
KXG26803	Sorghum	extracellular, plasma membrane	49.62	44.07
Zm00001d002803_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	48.11	43.81
Bra040587.1-P	Field mustard	extracellular	48.36	43.74
Bra023528.1-P	Field mustard	extracellular, plasma membrane, vacuole	47.61	43.55
TraesCS2D01G386400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	48.36	43.44
TraesCS6A01G158000.1	Wheat	endoplasmic reticulum	38.04	43.39
Os04t0540300-00	Rice	plasma membrane	47.86	43.28
TraesCS2A01G388600.1	Wheat	extracellular, plasma membrane	40.3	42.9
Bra039163.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	48.87	42.64
Bra008684.1-P	Field mustard	extracellular	41.56	42.64
Bra035951.1-P	Field mustard	plasma membrane	48.61	42.14
Bra012996.1-P	Field mustard	plasma membrane	48.36	42.01
TraesCS6B01G185800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	43.83	41.93
TraesCS6A01G330900.1	Wheat	extracellular, plasma membrane	43.32	41.35
Bra035948.1-P	Field mustard	cytosol	8.82	36.08
TraesCS2B01G406700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	38.54	35.66
Bra012993.1-P	Field mustard	endoplasmic reticulum, extracellular	16.12	31.07
HORVU2Hr1G092510.1	Barley	mitochondrion	17.13	21.25
Bra035768.1-P	Field mustard	mitochondrion, peroxisome, plastid	20.15	21.05
Bra020151.1-P	Field mustard	cytosol	12.09	18.53
Bra036147.1-P	Field mustard	plasma membrane	26.45	15.86
Bra033528.1-P	Field mustard	plasma membrane	25.94	15.63
Bra023941.1-P	Field mustard	plasma membrane	25.94	15.33
Bra026378.1-P	Field mustard	extracellular, golgi, vacuole	25.19	15.31
Bra001795.1-P	Field mustard	endoplasmic reticulum, vacuole	25.44	15.12
Bra010411.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	24.94	14.93
Bra021208.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	24.69	14.69

Protein Annotations

EnsemblPlants:Bra019992.1	EnsemblPlants:Bra019992.1-P	EnsemblPlantsGene:Bra019992	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987
GO:GO:0010215	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007
InterPro:COBRA_pln	PANTHER:PTHR31673	PANTHER:PTHR31673:SF12	PFAM:PD140986	PFAM:PF04833	PIRSF:PIRSF038122
SEG:seg	UniParc:UPI000253E922	UniProt:M4DTZ9	MapMan:21.1.2.2	:	:

Description

AT1G09790 (E=2e-183) COBL6 | COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR)

Coordinates

chrA06:-:3345712..3348018

Molecular Weight (calculated)

44913.1 Da

IEP (calculated)

7.855

GRAVY (calculated)

-0.403

Length

397 amino acids

Sequence
(BLAST)

001: MQEYRHIDKP GWKLSWHWES KQVIWDMRGA ETTEQGNCSA FASSGTLPHC CLRRPTIVDL LPGSPFNSQV SNCCRGGVLT SMSQDHTNHV SVFHMTIGSF
101: PDDSGEFTMP SNFDIGVSGY SCDNATSVAP TKYSTDKGRR KTQALAATWE AVCVYSQFRS SQTPKCCVSL SAFYYRNIVP CPTCSCGCSS SHCVKPGEMP
201: PYLEQKHDPE EEVPPVVECT KHMCPIHIHW HVKVNYREYW RVKITATNLN TMKNYTDWNL VVLHPNLKSV EQVFSFNYKS LTPYHNGIND TGMFWGVKFY
301: NDVLLQAGKI GNVQTELLLK KDMGNFSFRE GWAFPRRILF NGDECVMPSP DDYPRLPGYA SSSSSSAASS FVTIVPITSE YWIPSKSKPR CINRVWY

Best Arabidopsis Sequence Match ( AT1G09790.1 )
(BLAST)

001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV

Arabidopsis Description

COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.