Factsheet for Os04t0540300-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 9
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G388600.1	Wheat	extracellular, plasma membrane	58.77	69.17
TraesCS2D01G386400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	65.83	65.38
KXG26803	Sorghum	extracellular, plasma membrane	65.15	63.98
Zm00001d002803_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	63.1	63.53
TraesCS2B01G406700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	57.4	58.74
GSMUA_Achr4P27070_001	Banana	cytosol	54.44	57.73
VIT_12s0035g00630.t01	Wine grape	extracellular, plasma membrane	51.25	52.2
Solyc01g103860.2.1	Tomato	cytosol	49.89	51.77
Bra030800.1-P	Field mustard	cytosol	46.01	48.44
CDX93481	Canola	plasma membrane	48.06	48.06
Os07t0604300-01	Rice	extracellular	48.75	47.98
Bra019992.1-P	Field mustard	cytosol	43.28	47.86
AT1G09790.1	Thale cress	plasma membrane	49.2	47.58
CDY31063	Canola	plasma membrane	46.47	47.0
Os03t0416300-01	Rice	extracellular	47.38	45.41
Os07t0604400-00	Rice	extracellular	46.47	45.23
Os05t0386800-01	Rice	extracellular	46.7	44.86
CDY20671	Canola	extracellular, plasma membrane, vacuole	46.24	44.62
Os03t0416200-01	Rice	extracellular, golgi, plasma membrane	46.7	43.8
Os10t0497700-01	Rice	extracellular	38.27	39.53
HORVU2Hr1G092510.1	Barley	mitochondrion	27.11	37.19
Os03t0754500-00	Rice	extracellular	18.0	36.92
CDX94950	Canola	nucleus	45.56	35.09
Os07t0690900-01	Rice	plasma membrane	25.74	16.74
Os06t0685100-00	Rice	plasma membrane	24.83	15.96
Os03t0301200-01	Rice	extracellular, plasma membrane, vacuole	24.15	15.8

Protein Annotations

MapMan:21.1.2.2	ProteinID:BAS90288.1	ProteinID:CAE02786.2	InterPro:COBRA_pln	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020	GO:GO:0016043
GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	EnsemblPlantsGene:Os04g0540300	EnsemblPlants:Os04t0540300-00	PFAM:PD140986
PFAM:PF04833	PIRSF:PIRSF038122	PANTHER:PTHR31673	PANTHER:PTHR31673:SF12	UniProt:Q7XR91	SignalP:SignalP-noTM
UniParc:UPI000021C65D	SEG:seg	:	:	:	:

Description

BC1LP1COBRA-like protein 7. (Os04t0540300-00)

Coordinates

chr4:+:27032815..27034819

Molecular Weight (calculated)

49307.7 Da

IEP (calculated)

6.999

GRAVY (calculated)

-0.214

Length

439 amino acids

Sequence
(BLAST)

001: MDVDQLILFV FVCCLSSRFA DAYDPVDPNG NIIINWDFQS IENVYTVMVS VHNHQLYRHI EQPGWRLSWR WAGNEIIWGM TGAEATEQGD CHRIRGATRP
101: HCCEKQPVIV DLPPGTPYNN QVSSCCRGGV LSSLTQNNRT STAAFQMVVG GFRRATYHDG DRGPALPSRF GVGVPGYSCS NATKVNATSS ERFLLPRARA
201: PCAVTWQVTC TYSQFMEAAS PTCCVSLSSF YNSTIVPCPR CSCGCPRSPT APQCISEGEK PELPAGDGEA VAPVFRCTDH MCPVRVHWHV KISYREYWRV
301: KVTITNYNQV KNYSDWNLVV QHPNLRSLTQ LFSFNYQPLI EYGTLNDTGM FWGIQYYNEM MLQDGNVQTE MILKKDKSDF TFSGGWAFPR RVYFDGHECV
401: MPPPDQYPLL PNGGPDSRVS AAQLIASSCL LLPFIFLIM

Best Arabidopsis Sequence Match ( AT1G09790.1 )
(BLAST)

001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV

Arabidopsis Description

COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.