Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 6
- plasma membrane 8
- endoplasmic reticulum 5
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
24083427
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0754500-00 | Rice | extracellular | 42.23 | 90.19 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 77.46 | 77.63 |
| VIT_14s0083g01160.t01 | Wine grape | vacuole | 73.74 | 77.29 |
| Solyc02g065770.2.1 | Tomato | extracellular | 73.52 | 75.68 |
| GSMUA_Achr4P01440_001 | Banana | extracellular, plasma membrane | 75.27 | 75.27 |
| PGSC0003DMT400068328 | Potato | extracellular | 73.09 | 75.23 |
| PGSC0003DMT400003470 | Potato | extracellular | 73.3 | 74.94 |
| Solyc02g089120.2.1 | Tomato | extracellular | 73.09 | 74.72 |
| GSMUA_Achr1P24500_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 74.62 | 74.45 |
| KRH63181 | Soybean | endoplasmic reticulum | 74.18 | 74.34 |
| KRH54735 | Soybean | endoplasmic reticulum | 73.96 | 74.12 |
| KRH72178 | Soybean | mitochondrion | 59.74 | 73.98 |
| KRH03165 | Soybean | extracellular | 73.09 | 73.57 |
| KRH01360 | Soybean | extracellular, golgi, plasma membrane | 71.55 | 72.99 |
| KRH45084 | Soybean | extracellular, golgi, plasma membrane | 70.68 | 72.1 |
| Os07t0604300-01 | Rice | extracellular | 70.24 | 71.97 |
| GSMUA_Achr2P06240_001 | Banana | mitochondrion | 74.62 | 71.49 |
| KRG93684 | Soybean | extracellular, vacuole | 70.68 | 71.15 |
| CDY70289 | Canola | extracellular | 61.71 | 71.03 |
| Bra025406.1-P | Field mustard | extracellular | 66.96 | 70.18 |
| CDX85277 | Canola | extracellular | 66.96 | 70.18 |
| CDX86358 | Canola | extracellular | 66.96 | 70.18 |
| AT5G60920.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 69.8 | 69.96 |
| Os10t0497700-01 | Rice | extracellular | 64.77 | 69.65 |
| CDX87193 | Canola | plasma membrane | 69.15 | 69.3 |
| Bra040587.1-P | Field mustard | extracellular | 66.3 | 69.02 |
| CDY58691 | Canola | plasma membrane | 69.15 | 69.0 |
| CDY16831 | Canola | plasma membrane | 69.15 | 69.0 |
| CDY02184 | Canola | plasma membrane | 68.93 | 68.93 |
| Bra012996.1-P | Field mustard | plasma membrane | 68.71 | 68.71 |
| KRH18352 | Soybean | plasma membrane | 68.71 | 68.56 |
| Bra035951.1-P | Field mustard | plasma membrane | 68.49 | 68.34 |
| AT3G29810.1 | Thale cress | extracellular | 65.65 | 68.03 |
| Os03t0416300-01 | Rice | extracellular | 66.96 | 66.81 |
| AT3G02210.1 | Thale cress | extracellular | 65.65 | 66.37 |
| Bra039163.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 65.65 | 65.93 |
| CDY60470 | Canola | plasma membrane | 65.43 | 65.28 |
| CDY43250 | Canola | plasma membrane | 64.99 | 64.99 |
| Os03t0416200-01 | Rice | extracellular, golgi, plasma membrane | 63.46 | 61.97 |
| Os07t0604400-00 | Rice | extracellular | 60.61 | 61.42 |
| KRH56778 | Soybean | extracellular | 27.79 | 60.77 |
| CDY42842 | Canola | cytosol | 16.19 | 60.66 |
| CDY24004 | Canola | cytosol, nucleus, plastid | 11.16 | 60.0 |
| Bra029346.1-P | Field mustard | cytosol, plasma membrane, plastid | 15.54 | 57.72 |
| CDY29033 | Canola | cytosol | 22.32 | 56.04 |
| Os04t0540300-00 | Rice | plasma membrane | 44.86 | 46.7 |
| CDY14723 | Canola | cytosol | 27.57 | 39.62 |
| Os03t0301200-01 | Rice | extracellular, plasma membrane, vacuole | 28.67 | 19.52 |
| Os07t0690900-01 | Rice | plasma membrane | 28.23 | 19.11 |
| Os06t0685100-00 | Rice | plasma membrane | 25.16 | 16.84 |
Protein Annotations
| MapMan:21.1.2.2 | ProteinID:AAV31332.1 | EMBL:AK060897 | EMBL:AK070472 | ProteinID:BAF17333.1 | ProteinID:BAS93810.1 |
| InterPro:COBRA_pln | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0010215 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 |
| GO:GO:0040007 | EnsemblPlantsGene:Os05g0386800 | EnsemblPlants:Os05t0386800-01 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 |
| PANTHER:PTHR31673 | PANTHER:PTHR31673:SF3 | UniProt:Q60E70 | SignalP:SignalP-noTM | UniParc:UPI00004503ED | SEG:seg |
Description
BRITTLE CULM-LIKE 4, brittle culm 1 like 4COBRA-like protein, Cellulose synthesis (Os05t0386800-01);Similar to Phytochelatin synthetase-like protein 2. (Os05t0386800-02);Similar to COBRA-like protein 3. (Os05t0386800-03)
Coordinates
chr5:-:18721311..18724814
Molecular Weight (calculated)
50445.4 Da
IEP (calculated)
8.540
GRAVY (calculated)
-0.143
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVGGAGSSR SVAPCCCCAV LLAAALLFSA PATTEAYDAL DPNGNITIKW DVMSWTPDGY VAVVTMFNYQ QFRHIQAPGW QLGWTWAKKE VIWSMVGAQT
101: TEQGDCSKFK GGTPHCCKKD PTVVDLLPGT PYNMQIANCC KAGVINTFNQ DPSNAASSFQ ISVGLAGTTN KTVKLPKNFT LKAPGPGYTC GRAMIVRPTK
201: FFTGDGRRAT QALMTWNVTC TYSQFLAQKT PSCCVSLSSF YNDTIVNCPT CSCGCQNNGT SPGSCVNENS PYLQSAIDGP GKWTGQPLVQ CTSHMCPIRI
301: HWHVKLNYKE YWRVKITITN FNYRMNYTQW NLVAQHPNFN NITQLFSFNY KPLTPYGSKI NDTAMFWGVK FYNDLLMQAG PLGNAQSELL LRKDSKDFTF
401: DKGWAFPHRV YFNGDNCVMP PPDAYPWLPN ASPLTKQPLT LSVLVFSIVL ATLLAYA
101: TEQGDCSKFK GGTPHCCKKD PTVVDLLPGT PYNMQIANCC KAGVINTFNQ DPSNAASSFQ ISVGLAGTTN KTVKLPKNFT LKAPGPGYTC GRAMIVRPTK
201: FFTGDGRRAT QALMTWNVTC TYSQFLAQKT PSCCVSLSSF YNDTIVNCPT CSCGCQNNGT SPGSCVNENS PYLQSAIDGP GKWTGQPLVQ CTSHMCPIRI
301: HWHVKLNYKE YWRVKITITN FNYRMNYTQW NLVAQHPNFN NITQLFSFNY KPLTPYGSKI NDTAMFWGVK FYNDLLMQAG PLGNAQSELL LRKDSKDFTF
401: DKGWAFPHRV YFNGDNCVMP PPDAYPWLPN ASPLTKQPLT LSVLVFSIVL ATLLAYA
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [plasma membrane,endoplasmic reticulum,plastid]
SUBAcon: [plasma membrane,endoplasmic reticulum,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.