Factsheet for Os03t0416200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94687	Sorghum	extracellular	82.91	87.0
Zm00001d047276_P001	Maize	plasma membrane	83.12	86.44
TraesCS5A01G095200.1	Wheat	extracellular	82.91	86.41
HORVU3Hr1G007580.2	Barley	extracellular	69.23	86.4
TraesCS5B01G101400.1	Wheat	extracellular	82.91	86.22
TraesCS5D01G107900.1	Wheat	extracellular	82.69	86.19
HORVU3Hr1G009960.1	Barley	plastid	38.46	82.57
TraesCSU01G047200.1	Wheat	plastid	40.17	81.03
TraesCS3D01G047900.1	Wheat	plastid	42.73	80.32
KRH18350	Soybean	cytosol	27.35	71.91
VIT_14s0083g01150.t01	Wine grape	plasma membrane	66.03	71.69
PGSC0003DMT400002674	Potato	plasma membrane	66.45	71.66
PGSC0003DMT400003723	Potato	extracellular	66.24	71.43
AT5G15630.1	Thale cress	extracellular, plasma membrane, vacuole	65.6	71.23
Solyc03g070440.2.1	Tomato	extracellular	65.6	71.23
KRH45086	Soybean	plasma membrane	65.6	71.23
KRH01361	Soybean	extracellular, plasma membrane, vacuole	65.6	71.23
GSMUA_Achr4P03210_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	67.73	70.92
Bra008684.1-P	Field mustard	extracellular	58.55	70.8
KRG93686	Soybean	extracellular, plasma membrane, vacuole	65.17	70.77
GSMUA_Achr4P14440_001	Banana	plasma membrane	69.23	70.74
Solyc02g089130.2.1	Tomato	extracellular	65.6	70.74
Os07t0604400-00	Rice	extracellular	68.16	70.73
PGSC0003DMT400082702	Potato	extracellular	37.39	70.56
Bra023528.1-P	Field mustard	extracellular, plasma membrane, vacuole	65.17	70.28
Solyc03g114900.2.1	Tomato	extracellular	66.45	69.57
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	66.03	67.91
Os05t0386800-01	Rice	extracellular	61.97	63.46
VIT_17s0000g05050.t01	Wine grape	cytosol	8.12	63.33
Os03t0754500-00	Rice	extracellular	28.85	63.08
KRH63180	Soybean	plasma membrane	59.83	61.14
KRH54737	Soybean	plasma membrane	59.62	60.92
Os07t0604300-01	Rice	extracellular	57.48	60.31
Os03t0416300-01	Rice	extracellular	56.62	57.86
CDY26445	Canola	cytosol	19.87	55.03
Os10t0497700-01	Rice	extracellular	48.08	52.94
Bra012993.1-P	Field mustard	endoplasmic reticulum, extracellular	22.86	51.94
AT5G60950.1	Thale cress	endoplasmic reticulum	22.01	50.49
Os04t0540300-00	Rice	plasma membrane	43.8	46.7
Solyc02g064790.1.1	Tomato	extracellular, vacuole	6.84	46.38
VIT_17s0000g05060.t01	Wine grape	plasma membrane	67.52	33.94
Os07t0690900-01	Rice	plasma membrane	26.5	18.37
Os03t0301200-01	Rice	extracellular, plasma membrane, vacuole	25.0	17.44
Os06t0685100-00	Rice	plasma membrane	25.43	17.42

Protein Annotations

MapMan:21.1.2.2	EntrezGene:4333114	ProteinID:AAQ56120.1	ProteinID:AAS07098.1	ProteinID:ABF96617.1	EMBL:AK069631
ProteinID:BAF12280.1	ProteinID:BAS84702.1	InterPro:COBRA_pln	ProteinID:EAZ27328.1	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020	GO:GO:0016043
GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	EnsemblPlantsGene:Os03g0416200	EnsemblPlants:Os03t0416200-01	PFAM:PD140986
PFAM:PF04833	PIRSF:PIRSF038122	PANTHER:PTHR31673	PANTHER:PTHR31673:SF2	UniProt:Q10JL1	SignalP:SignalP-noTM
UniParc:UPI00001BE417	RefSeq:XP_015633140.1	SEG:seg	:	:	:

Description

BRITTLE CULM 1BRITTLE CULM1. (Os03t0416200-01);BRITTLE CULM1. (Os03t0416200-02)

Coordinates

chr3:+:17260407..17262436

Molecular Weight (calculated)

50963.1 Da

IEP (calculated)

9.042

GRAVY (calculated)

-0.153

Length

468 amino acids

Sequence
(BLAST)

001: MELHRCSLLA LLLAVTCSVA VAYDPLDPKG NITIKWDVIS WTPDGYVAMV TMSNYQMYRQ ILAPGWTVGW SWAKKEVIWS IVGAQATEQG DCSKFKGGIP
101: HSCKRTPAIV DLLPGVPYNQ QIANCCKAGV VSAYGQDPAG SVSAFQVSVG LAGTTNKTVK LPTNFTLAGP GPGYTCGPAT IVPSTVYLTP DRRRRTQALM
201: TWTVTCTYSQ QLASRYPTCC VSFSSFYNST IVPCARCACG CGHDGYRGNG GGGKNARAGD GRSRRNSGGG GGHSGGTECI MGDSKRALSA GVNTPRKDGA
301: PLLQCTSHMC PIRVHWHVKL NYKDYWRAKI AITNFNYRMN YTQWTLVAQH PNLNNVTEVF SFQYKPLLPY GNINDTGMFY GLKFYNDLLM EAGPFGNVQS
401: EVLMRKDYNT FTFSQGWAFP RKIYFNGDEC KMPPPDSYPY LPNSAPIGPP RSVAAAASAI LVVLLLVA

Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)

001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W

Arabidopsis Description

COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.