Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 9
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400082702 | Potato | extracellular | 57.14 | 100.0 |
| Solyc03g070440.2.1 | Tomato | extracellular | 96.31 | 96.98 |
| PGSC0003DMT400003723 | Potato | extracellular | 85.25 | 85.25 |
| VIT_14s0083g01150.t01 | Wine grape | plasma membrane | 81.11 | 81.67 |
| KRH45086 | Soybean | plasma membrane | 77.88 | 78.42 |
| KRH01361 | Soybean | extracellular, plasma membrane, vacuole | 77.65 | 78.19 |
| KRG93686 | Soybean | extracellular, plasma membrane, vacuole | 77.42 | 77.96 |
| AT5G15630.1 | Thale cress | extracellular, plasma membrane, vacuole | 76.96 | 77.49 |
| CDX90983 | Canola | extracellular | 76.96 | 76.78 |
| Bra008684.1-P | Field mustard | extracellular | 67.97 | 76.23 |
| Bra023528.1-P | Field mustard | extracellular, plasma membrane, vacuole | 76.04 | 76.04 |
| KRH18350 | Soybean | cytosol | 30.65 | 74.72 |
| CDX69511 | Canola | plasma membrane | 76.73 | 73.19 |
| PGSC0003DMT400063055 | Potato | extracellular, mitochondrion | 76.73 | 73.19 |
| GSMUA_Achr4P03210_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 75.12 | 72.93 |
| CDX85543 | Canola | extracellular, plasma membrane, vacuole | 75.81 | 72.15 |
| CDY26444 | Canola | plastid | 59.45 | 70.49 |
| GSMUA_Achr4P14440_001 | Banana | plasma membrane | 73.73 | 69.87 |
| EER94687 | Sorghum | extracellular | 71.66 | 69.73 |
| EER99679 | Sorghum | plasma membrane | 70.51 | 68.61 |
| Zm00001d047276_P001 | Maize | plasma membrane | 70.97 | 68.44 |
| VIT_17s0000g05050.t01 | Wine grape | cytosol | 9.45 | 68.33 |
| TraesCS5D01G107900.1 | Wheat | extracellular | 70.51 | 68.15 |
| TraesCS5A01G095200.1 | Wheat | extracellular | 70.28 | 67.93 |
| TraesCS2D01G182400.1 | Wheat | plasma membrane | 69.82 | 67.79 |
| TraesCS5B01G101400.1 | Wheat | extracellular | 70.28 | 67.78 |
| TraesCS2A01G175000.1 | Wheat | plasma membrane | 70.05 | 67.71 |
| HORVU3Hr1G007580.2 | Barley | extracellular | 58.29 | 67.47 |
| TraesCS2B01G201400.1 | Wheat | plasma membrane | 69.59 | 67.41 |
| Zm00001d022082_P001 | Maize | extracellular, plasma membrane, vacuole | 69.12 | 67.11 |
| Os03t0416200-01 | Rice | extracellular, golgi, plasma membrane | 71.66 | 66.45 |
| PGSC0003DMT400003470 | Potato | extracellular | 67.74 | 65.77 |
| Os07t0604400-00 | Rice | extracellular | 68.2 | 65.63 |
| PGSC0003DMT400068328 | Potato | extracellular | 66.82 | 65.32 |
| KRH63180 | Soybean | plasma membrane | 67.51 | 63.97 |
| HORVU3Hr1G009960.1 | Barley | plastid | 32.03 | 63.76 |
| KRH54737 | Soybean | plasma membrane | 67.05 | 63.54 |
| HORVU2Hr1G033060.13 | Barley | mitochondrion | 64.29 | 62.42 |
| TraesCS3D01G047900.1 | Wheat | plastid | 35.25 | 61.45 |
| TraesCSU01G047200.1 | Wheat | plastid | 32.26 | 60.34 |
| PGSC0003DMT400063318 | Potato | cytosol | 55.07 | 59.16 |
| HORVU0Hr1G004650.3 | Barley | mitochondrion | 56.22 | 58.8 |
| Bra012993.1-P | Field mustard | endoplasmic reticulum, extracellular | 26.27 | 55.34 |
| CDY02181 | Canola | endoplasmic reticulum, extracellular | 26.27 | 55.34 |
| HORVU2Hr1G033080.1 | Barley | extracellular | 23.27 | 54.89 |
| CDY58695 | Canola | extracellular | 25.35 | 53.4 |
| AT5G60950.1 | Thale cress | endoplasmic reticulum | 24.65 | 52.45 |
| CDX70627 | Canola | cytosol, nucleus, plasma membrane | 77.42 | 39.16 |
| PGSC0003DMT400004139 | Potato | extracellular | 18.43 | 38.84 |
| CDX87194 | Canola | mitochondrion | 14.29 | 29.67 |
| PGSC0003DMT400081003 | Potato | cytosol | 7.83 | 29.31 |
| PGSC0003DMT400002667 | Potato | cytosol, golgi, peroxisome | 9.45 | 26.28 |
| PGSC0003DMT400065836 | Potato | cytosol | 27.65 | 25.59 |
| PGSC0003DMT400002688 | Potato | cytosol | 6.91 | 23.26 |
| PGSC0003DMT400002678 | Potato | vacuole | 29.72 | 19.52 |
| PGSC0003DMT400037398 | Potato | vacuole | 29.72 | 19.46 |
| PGSC0003DMT400065840 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 29.03 | 19.35 |
| PGSC0003DMT400005270 | Potato | cytosol | 28.34 | 17.18 |
Protein Annotations
| EntrezGene:102598920 | MapMan:21.1.2.2 | InterPro:COBRA_pln | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0010215 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 |
| GO:GO:0040007 | UniProt:M0ZKG3 | PFAM:PD140986 | PFAM:PF04833 | EnsemblPlantsGene:PGSC0003DMG400001031 | PGSC:PGSC0003DMG400001031 |
| EnsemblPlants:PGSC0003DMT400002674 | PIRSF:PIRSF038122 | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF2 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI000296B860 | RefSeq:XP_006363258.1 | : | : | : | : |
Description
Protein COBRA [Source:PGSC_GENE;Acc:PGSC0003DMG400001031]
Coordinates
chr3:-:12017930..12020282
Molecular Weight (calculated)
49121.5 Da
IEP (calculated)
8.815
GRAVY (calculated)
-0.129
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTYLITLVG LLFVLFSYAA AYDPLDPNGN ITIKWDVMSW TPDGYVAVVT MNNFQMYRHI MSPGWTLGWT WAKKEVIWTM IGAQATEQGD CSKFKGNIPH
101: CCKKTPTVVD MLPGVPYNQQ FTNCCKGGVL ASWGQDPQSS VSAFQVSVGQ AGTTNKTVKL PKNFTLLGPG PGYTCSPAKI VPPTKFFTAD LRRKTQALMT
201: WNVTCTYSQF VAQKHPKCCV SLSTFYNETI TSCPSCACGC ENKHKCIKSD SKLLSMVGVN TPRKDNAPLL QCTQHMCPVR IHWHVKLNYK EYWRVKITLT
301: NFNYRVNYTQ WTLVAQHPNL NNVTQVFSFD YKPLVPYQSI NDTGMFYGMK FYNDLLMEAG PAGNVQSEVL LQKDKDTFTL KQGWAFPRKV YFNGDECMLP
401: PPDTYPYLPN FAHQNLVAFS TLFCSIFLIL LVLF
101: CCKKTPTVVD MLPGVPYNQQ FTNCCKGGVL ASWGQDPQSS VSAFQVSVGQ AGTTNKTVKL PKNFTLLGPG PGYTCSPAKI VPPTKFFTAD LRRKTQALMT
201: WNVTCTYSQF VAQKHPKCCV SLSTFYNETI TSCPSCACGC ENKHKCIKSD SKLLSMVGVN TPRKDNAPLL QCTQHMCPVR IHWHVKLNYK EYWRVKITLT
301: NFNYRVNYTQ WTLVAQHPNL NNVTQVFSFD YKPLVPYQSI NDTGMFYGMK FYNDLLMEAG PAGNVQSEVL LQKDKDTFTL KQGWAFPRKV YFNGDECMLP
401: PPDTYPYLPN FAHQNLVAFS TLFCSIFLIL LVLF
001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W
Arabidopsis Description
COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.