Factsheet for TraesCSU01G047200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G047900.1	Wheat	plastid	83.62	77.91
KRH18350	Soybean	cytosol	48.71	63.48
VIT_17s0000g05050.t01	Wine grape	cytosol	14.66	56.67
HORVU3Hr1G007580.2	Barley	extracellular	90.09	55.73
CDY26445	Canola	cytosol	34.05	46.75
Os03t0416200-01	Rice	extracellular, golgi, plasma membrane	81.03	40.17
Zm00001d047276_P001	Maize	plasma membrane	75.86	39.11
EER94687	Sorghum	extracellular	75.0	39.01
Solyc02g064790.1.1	Tomato	extracellular, vacuole	10.34	34.78
GSMUA_Achr4P03210_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	64.66	33.56
AT5G15630.1	Thale cress	extracellular, plasma membrane, vacuole	62.07	33.41
GSMUA_Achr4P14440_001	Banana	plasma membrane	65.09	32.97
PGSC0003DMT400003723	Potato	extracellular	61.21	32.72
KRH45086	Soybean	plasma membrane	60.78	32.71
KRH01361	Soybean	extracellular, plasma membrane, vacuole	60.78	32.71
PGSC0003DMT400002674	Potato	plasma membrane	60.34	32.26
Solyc02g089130.2.1	Tomato	extracellular	60.34	32.26
Solyc03g070440.2.1	Tomato	extracellular	59.91	32.25
Bra023528.1-P	Field mustard	extracellular, plasma membrane, vacuole	59.91	32.03
KRG93686	Soybean	extracellular, plasma membrane, vacuole	59.48	32.02
VIT_14s0083g01150.t01	Wine grape	plasma membrane	59.48	32.02
Solyc03g114900.2.1	Tomato	extracellular	61.64	31.99
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	61.64	31.43
Bra008684.1-P	Field mustard	extracellular	49.14	29.46
KRH54737	Soybean	plasma membrane	56.47	28.6
KRH63180	Soybean	plasma membrane	56.03	28.38
VIT_17s0000g05060.t01	Wine grape	plasma membrane	62.93	15.68
PGSC0003DMT400082702	Potato	extracellular	10.78	10.08
AT5G60950.1	Thale cress	endoplasmic reticulum	2.16	2.45
Bra012993.1-P	Field mustard	endoplasmic reticulum, extracellular	2.16	2.43

Protein Annotations

EnsemblPlants:TraesCSU01G047200.1	EnsemblPlantsGene:TraesCSU01G047200	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31673	PANTHER:PTHR31673:SF2	SEG:seg	MapMan:21.1.2.2	:	:

Description

No Description!

Coordinates

chrUn:-:37157418..37158116

Molecular Weight (calculated)

26249.4 Da

IEP (calculated)

8.663

GRAVY (calculated)

-0.357

Length

232 amino acids

Sequence
(BLAST)

001: MTWTVMCTYS RQLASRYPTC CVSFSSYNST IVPCGCGPHK STGSRGGKSH GDGCIAGDPK KDGAQLLQCT NHMCPIRVHW HVKLNYKDYW RAEIAVTNFN
101: YRMNYTQWTL VAQHSNLNNV SEVFSFQYKP FFPYGNINDT GMFYGLKLYN DQLMEPGPFG NVQSEVLMRK DDTTFTFSQG RAFPRKIYFN GNECKMPPPE
201: SYPYLLNSTP PRSSIVTAAS TCLMLLLLLP AS

Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)

001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W

Arabidopsis Description

COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [extracellular,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.