Factsheet for TraesCS3D01G047900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G047200.1	Wheat	plastid	77.91	83.62
KRH18350	Soybean	cytosol	47.39	66.29
HORVU3Hr1G007580.2	Barley	extracellular	89.96	59.73
VIT_17s0000g05050.t01	Wine grape	cytosol	13.65	56.67
TraesCS5D01G107900.1	Wheat	extracellular	85.94	47.66
CDY26445	Canola	cytosol	30.92	45.56
Os03t0416200-01	Rice	extracellular, golgi, plasma membrane	80.32	42.73
EER94687	Sorghum	extracellular	73.9	41.26
Zm00001d047276_P001	Maize	plasma membrane	74.3	41.11
Solyc02g064790.1.1	Tomato	extracellular, vacuole	11.24	40.58
Solyc03g070440.2.1	Tomato	extracellular	61.45	35.5
AT5G15630.1	Thale cress	extracellular, plasma membrane, vacuole	61.04	35.27
PGSC0003DMT400003723	Potato	extracellular	61.45	35.25
PGSC0003DMT400002674	Potato	plasma membrane	61.45	35.25
TraesCS2D01G182400.1	Wheat	plasma membrane	63.05	35.12
Solyc02g089130.2.1	Tomato	extracellular	61.04	35.02
GSMUA_Achr4P14440_001	Banana	plasma membrane	64.26	34.93
KRH01361	Soybean	extracellular, plasma membrane, vacuole	60.24	34.8
KRH45086	Soybean	plasma membrane	60.24	34.8
KRG93686	Soybean	extracellular, plasma membrane, vacuole	59.84	34.57
GSMUA_Achr4P03210_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	61.85	34.45
Bra023528.1-P	Field mustard	extracellular, plasma membrane, vacuole	59.04	33.87
Solyc03g114900.2.1	Tomato	extracellular	60.64	33.78
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	60.64	33.19
VIT_14s0083g01150.t01	Wine grape	plasma membrane	57.43	33.18
Bra008684.1-P	Field mustard	extracellular	47.39	30.49
KRH63180	Soybean	plasma membrane	55.82	30.35
KRH54737	Soybean	plasma membrane	55.82	30.35
TraesCS5D01G401900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	55.02	29.98
TraesCS6D01G364400.1	Wheat	extracellular	53.82	29.98
TraesCS2D01G182500.1	Wheat	golgi	53.01	29.01
TraesCS4D01G082700.1	Wheat	extracellular	51.41	27.77
TraesCS2D01G386400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	44.58	25.11
TraesCS3D01G404800.2	Wheat	plasma membrane	44.58	24.29
VIT_17s0000g05060.t01	Wine grape	plasma membrane	61.04	16.33
PGSC0003DMT400082702	Potato	extracellular	11.65	11.69
TraesCS7D01G136500.1	Wheat	mitochondrion	24.5	9.05
TraesCS4D01G188600.1	Wheat	golgi	23.69	8.77
TraesCS2D01G092100.1	Wheat	plasma membrane	22.49	8.48
AT5G60950.1	Thale cress	endoplasmic reticulum	2.41	2.94
Bra012993.1-P	Field mustard	endoplasmic reticulum, extracellular	2.41	2.91
TraesCS5D01G402000.1	Wheat	extracellular	2.01	2.19

Protein Annotations

EnsemblPlants:TraesCS3D01G047900.1	EnsemblPlantsGene:TraesCS3D01G047900	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31673	PANTHER:PTHR31673:SF2	SEG:seg	MapMan:21.1.2.2	:	:

Description

No Description!

Coordinates

chr3D:+:17792525..17793274

Molecular Weight (calculated)

27992.6 Da

IEP (calculated)

9.002

GRAVY (calculated)

-0.227

Length

249 amino acids

Sequence
(BLAST)

001: MTWTVTCTYS EQLASRYSTC CVSFSSFYNS TIVPCARCAC GCTPHKSTSG RGGKSHSDGC IAGDSKRALT PGVNRPKKDG AQLLQCTNHM WPIHAHWHVK
101: LNYKDYWHAK IAVTNFNYRM NYTQWTLVAR HPNLNNVTKV FSFQYKPLLP YGNINDTAMF YGLKICNNLL MEAGPFGNVQ SELLIRKDDA TFTLSQGWAF
201: PRKIYFNGDE CKMPPPDSYP YLPNSAPLRS SIITVSSTCL MLLLLLLAS

Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)

001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W

Arabidopsis Description

COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.