Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 3
- golgi 2
- plastid 3
- cytosol 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G047900.1 | Wheat | plastid | 40.58 | 11.24 |
| Solyc03g070450.1.1 | Tomato | extracellular, vacuole | 33.33 | 10.7 |
| TraesCSU01G047200.1 | Wheat | plastid | 34.78 | 10.34 |
| HORVU3Hr1G007580.2 | Barley | extracellular | 43.48 | 8.0 |
| Solyc03g114900.2.1 | Tomato | extracellular | 50.72 | 7.83 |
| HORVU2Hr1G033060.13 | Barley | mitochondrion | 50.72 | 7.83 |
| TraesCS2D01G182400.1 | Wheat | plasma membrane | 50.72 | 7.83 |
| TraesCS2B01G201400.1 | Wheat | plasma membrane | 50.72 | 7.81 |
| TraesCS2A01G175000.1 | Wheat | plasma membrane | 50.72 | 7.8 |
| Os07t0604400-00 | Rice | extracellular | 50.72 | 7.76 |
| Solyc03g114890.2.1 | Tomato | extracellular | 44.93 | 7.73 |
| KRH54737 | Soybean | plasma membrane | 50.72 | 7.64 |
| Solyc02g065770.2.1 | Tomato | extracellular | 47.83 | 7.43 |
| KRH63180 | Soybean | plasma membrane | 49.28 | 7.42 |
| Solyc03g114910.2.1 | Tomato | extracellular, plasma membrane, vacuole | 49.28 | 7.42 |
| EER99679 | Sorghum | plasma membrane | 47.83 | 7.4 |
| EER94687 | Sorghum | extracellular | 47.83 | 7.4 |
| Solyc02g089120.2.1 | Tomato | extracellular | 47.83 | 7.38 |
| TraesCS5A01G095200.1 | Wheat | extracellular | 47.83 | 7.35 |
| TraesCS5D01G107900.1 | Wheat | extracellular | 47.83 | 7.35 |
| TraesCS5B01G101400.1 | Wheat | extracellular | 47.83 | 7.33 |
| GSMUA_Achr4P14440_001 | Banana | plasma membrane | 47.83 | 7.21 |
| Solyc03g070440.2.1 | Tomato | extracellular | 44.93 | 7.19 |
| Zm00001d022082_P001 | Maize | extracellular, plasma membrane, vacuole | 46.38 | 7.16 |
| GSMUA_Achr4P03210_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 46.38 | 7.16 |
| Zm00001d047276_P001 | Maize | plasma membrane | 46.38 | 7.11 |
| Solyc02g089130.2.1 | Tomato | extracellular | 43.48 | 6.91 |
| Solyc03g114880.1.1 | Tomato | cytosol, extracellular, vacuole | 31.88 | 6.9 |
| Os03t0416200-01 | Rice | extracellular, golgi, plasma membrane | 46.38 | 6.84 |
| Solyc01g111050.2.1 | Tomato | cytosol | 43.48 | 6.4 |
| Solyc01g103860.2.1 | Tomato | cytosol | 34.78 | 5.67 |
| Solyc02g080250.1.1 | Tomato | cytosol | 18.84 | 3.8 |
| Solyc09g075540.1.1 | Tomato | plasma membrane | 34.78 | 3.68 |
| HORVU3Hr1G009960.1 | Barley | plastid | 11.59 | 3.67 |
| Solyc01g065530.2.1 | Tomato | nucleus, plastid | 33.33 | 3.55 |
| Solyc10g006450.2.1 | Tomato | golgi, plasma membrane, vacuole | 30.43 | 3.13 |
| HORVU2Hr1G033080.1 | Barley | extracellular | 5.8 | 2.17 |
| HORVU0Hr1G004650.3 | Barley | mitochondrion | 13.04 | 2.17 |
| Solyc03g070460.1.1 | Tomato | cytosol | 2.9 | 1.72 |
| VIT_17s0000g05050.t01 | Wine grape | cytosol | 1.45 | 1.67 |
| Solyc07g064200.2.1 | Tomato | extracellular, golgi, vacuole | 11.59 | 1.3 |
| Solyc02g080240.1.1 | Tomato | extracellular | 5.8 | 1.04 |
Protein Annotations
| EnsemblPlants:Solyc02g064790.1.1 | EnsemblPlantsGene:Solyc02g064790.1 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 |
| InterPro:COBRA_pln | PANTHER:PTHR31673 | TMHMM:TMhelix | UniParc:UPI0002768846 | UniProt:K4B6R5 | MapMan:35.2 |
Description
No Description!
Coordinates
chr2:-:35899877..35900086
Molecular Weight (calculated)
7750.4 Da
IEP (calculated)
7.244
GRAVY (calculated)
0.270
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSPSCYSPT LFSFKNGWAF PHTVYFNGDY CVMPLPDSYP SLPNGTSKRE ASLFMTYNVF ILVLALLIT
001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL
Arabidopsis Description
COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.