Factsheet for Solyc01g111050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004139	Potato	extracellular	36.89	83.98
VIT_03s0038g01430.t01	Wine grape	mitochondrion	23.88	67.88
VIT_03s0038g01420.t01	Wine grape	extracellular, plasma membrane	31.13	58.4
KRH51434	Soybean	endoplasmic reticulum, plasma membrane, vacuole	54.16	57.08
KRH60734	Soybean	plasma membrane	53.52	56.15
Solyc03g114890.2.1	Tomato	extracellular	38.81	45.39
Solyc03g070440.2.1	Tomato	extracellular	40.51	44.08
Solyc02g089120.2.1	Tomato	extracellular	41.58	43.62
Solyc02g064790.1.1	Tomato	extracellular, vacuole	6.4	43.48
Solyc02g065770.2.1	Tomato	extracellular	41.15	43.47
Solyc02g089130.2.1	Tomato	extracellular	40.09	43.32
Solyc03g114910.2.1	Tomato	extracellular, plasma membrane, vacuole	42.0	43.01
Solyc03g114900.2.1	Tomato	extracellular	39.66	41.61
Solyc01g103860.2.1	Tomato	cytosol	36.89	40.9
Solyc03g070460.1.1	Tomato	cytosol	10.02	40.52
Solyc03g114880.1.1	Tomato	cytosol, extracellular, vacuole	24.09	35.42
Solyc03g070450.1.1	Tomato	extracellular, vacuole	13.65	29.77
Solyc02g080250.1.1	Tomato	cytosol	14.71	20.18
Solyc10g006450.2.1	Tomato	golgi, plasma membrane, vacuole	25.37	17.73
Solyc01g065530.2.1	Tomato	nucleus, plastid	24.09	17.44
Solyc09g075540.1.1	Tomato	plasma membrane	22.81	16.41
Solyc07g064200.2.1	Tomato	extracellular, golgi, vacuole	19.4	14.8
Solyc02g080240.1.1	Tomato	extracellular	10.87	13.25

Protein Annotations

MapMan:21.1.2.2	InterPro:CBM2/CBM3_carb-bd_dom_sf	InterPro:COBRA_pln	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049
GO:GO:0030246	GO:GO:0031225	GO:GO:0040007	UniProt:K4B3W8	PFAM:PD140986	PFAM:PF04833
PIRSF:PIRSF038122	PANTHER:PTHR31673	PANTHER:PTHR31673:SF9	SUPFAM:SSF49384	EnsemblPlantsGene:Solyc01g111050.2	EnsemblPlants:Solyc01g111050.2.1
UniParc:UPI000276918A	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:97451618..97454751

Molecular Weight (calculated)

53661.0 Da

IEP (calculated)

7.650

GRAVY (calculated)

-0.288

Length

469 amino acids

Sequence
(BLAST)

001: MQRKDHGLDQ WTRVFSPDVD CYDPLDPTGN ISVKYDIVRW TEDGYQARIT IQNYYKYRHI EKPGWQLGWT WAANEVIWSM SGAFATQQGN CSAFRSEIPH
101: CCKRSPIIVD FAPEAPPENK LDGCCHGGLL AASAINPSNS FASFEMKVGN LRGNFTVHKP LNLTLMAPGP GYTCDEFMDT DPTTSLVIEG QRQEQVIRTW
201: KSTCTYSTFL ANNLPTCCVS LSTFYNPEVT PCNLCSCGCK LADNEAKSCI GLVTKQNSFF YRMKYFNFAH FAKSADFVVV YIYVWNRQRS SGPYVRELIQ
301: CTDHMCPLRV HWHIKKNYMN YWRVKLTVSN YNLGKNYSNW NLVVQHPGFS QQTTVFSFNS TMLSTVGVPD EVALFWGLDL YNDALLQAEE KQMGSVTTEI
401: LLLKDMNSFT LRNGWAFPRR IYFNGENCEM PLPQSFPMLP NGCSREKPCN SYLSMLLLSI YLTYKTLNF

Best Arabidopsis Sequence Match ( AT3G02210.1 )
(BLAST)

001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL

Arabidopsis Description

COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.