Factsheet for PGSC0003DMT400004139

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g01430.t01	Wine grape	mitochondrion	53.88	67.27
Solyc01g111050.2.1	Tomato	cytosol	83.98	36.89
PGSC0003DMT400081003	Potato	cytosol	14.56	25.86
KRH51434	Soybean	endoplasmic reticulum, plasma membrane, vacuole	55.83	25.84
KRH60734	Soybean	plasma membrane	54.85	25.28
PGSC0003DMT400002688	Potato	cytosol	14.08	22.48
PGSC0003DMT400063318	Potato	cytosol	40.78	20.79
PGSC0003DMT400002667	Potato	cytosol, golgi, peroxisome	15.53	20.51
PGSC0003DMT400003470	Potato	extracellular	42.23	19.46
PGSC0003DMT400003723	Potato	extracellular	39.81	18.89
PGSC0003DMT400068328	Potato	extracellular	40.29	18.69
PGSC0003DMT400002674	Potato	plasma membrane	38.84	18.43
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	39.32	17.8
PGSC0003DMT400065836	Potato	cytosol	22.82	10.02
PGSC0003DMT400065840	Potato	endoplasmic reticulum, extracellular, plasma membrane	22.82	7.22
PGSC0003DMT400037398	Potato	vacuole	22.33	6.94
PGSC0003DMT400002678	Potato	vacuole	21.84	6.81
PGSC0003DMT400005270	Potato	cytosol	22.33	6.42
VIT_03s0038g01420.t01	Wine grape	extracellular, plasma membrane	4.37	3.6
PGSC0003DMT400082702	Potato	extracellular	1.94	1.61

Protein Annotations

EnsemblPlants:PGSC0003DMT400004139	EnsemblPlantsGene:PGSC0003DMG400001637	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31673	PANTHER:PTHR31673:SF9	PGSC:PGSC0003DMG400001637	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0002960CEB
UniProt:M0ZMY3	MapMan:21.1.2.2	:	:	:	:

Description

Protein COBRA [Source:PGSC_GENE;Acc:PGSC0003DMG400001637]

Coordinates

chr1:+:87132254..87135002

Molecular Weight (calculated)

23751.4 Da

IEP (calculated)

7.884

GRAVY (calculated)

-0.175

Length

206 amino acids

Sequence
(BLAST)

001: MLCDVALLIL TGWIASSTFN QRQSSSSPYE RELLQCTDHM CPLRVHWHIK KNYRNYWRVK LTVSNYNLGK NYSNWNLVVQ HPGFSQQATV FSFNNAMLST
101: VGVPDEVALF WGLDFYNDAL LQAEEKQVGS VTTEILLLKD MTSFTLSNGW AFPRRIYFNG ENCEMPLPQT FPMLPNGSSR EKPCNSHLSV LLLSIYLTYK
201: TLNFWS

Best Arabidopsis Sequence Match ( AT1G09790.1 )
(BLAST)

001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV

Arabidopsis Description

COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.