Factsheet for PGSC0003DMT400081003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 2
cytosol 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002667	Potato	cytosol, golgi, peroxisome	100.0	74.36
PGSC0003DMT400004139	Potato	extracellular	25.86	14.56
PGSC0003DMT400002688	Potato	cytosol	13.79	12.4
PGSC0003DMT400003470	Potato	extracellular	35.34	9.17
PGSC0003DMT400068328	Potato	extracellular	33.62	8.78
PGSC0003DMT400063318	Potato	cytosol	30.17	8.66
PGSC0003DMT400002674	Potato	plasma membrane	29.31	7.83
PGSC0003DMT400003723	Potato	extracellular	25.86	6.91
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	26.72	6.81
PGSC0003DMT400065836	Potato	cytosol	13.79	3.41
PGSC0003DMT400037398	Potato	vacuole	17.24	3.02
PGSC0003DMT400002678	Potato	vacuole	15.52	2.72
PGSC0003DMT400065840	Potato	endoplasmic reticulum, extracellular, plasma membrane	13.79	2.46
PGSC0003DMT400005270	Potato	cytosol	13.79	2.23
PGSC0003DMT400082702	Potato	extracellular	1.72	0.81
Solyc02g080240.1.1	Tomato	extracellular	0.86	0.26
Bra035948.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400081003	EnsemblPlantsGene:PGSC0003DMG400031567	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007
InterPro:COBRA_pln	PANTHER:PTHR31673	PANTHER:PTHR31673:SF3	PGSC:PGSC0003DMG400031567	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002949665	UniProt:M1D499	MapMan:35.1	:	:	:

Description

Phytochelatin synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400031567]

Coordinates

chr00:+:43511793..43512159

Molecular Weight (calculated)

13048.7 Da

IEP (calculated)

7.506

GRAVY (calculated)

-0.128

Length

116 amino acids

Sequence
(BLAST)

001: MLWGVKSSND LLVQPGPSGN VQFELLLRKD TSNLTLDKGW AFPRRVYFNG DNCIMPPSEA YPHLSNDVSA MPPPDADPHM PNAASQWKVS LLKLVVTVMF
101: SMTFFFANTY KSYALY

Best Arabidopsis Sequence Match ( AT3G02210.1 )
(BLAST)

001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL

Arabidopsis Description

COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.