Factsheet for PGSC0003DMT400068328

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g065770.2.1	Tomato	extracellular	96.85	96.85
PGSC0003DMT400003470	Potato	extracellular	84.68	84.12
VIT_17s0000g05070.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	78.83	76.75
Zm00001d031479_P001	Maize	cytosol, mitochondrion	27.93	75.61
GSMUA_Achr4P01440_001	Banana	extracellular, plasma membrane	77.25	75.05
GSMUA_Achr1P24500_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	77.25	74.89
AT5G60920.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	76.8	74.78
Os03t0754500-00	Rice	extracellular	35.81	74.3
KRH63181	Soybean	endoplasmic reticulum	76.13	74.12
KRH54735	Soybean	endoplasmic reticulum	75.9	73.9
KRH03165	Soybean	extracellular	74.77	73.13
Os05t0386800-01	Rice	extracellular	75.23	73.09
Zm00001d013256_P001	Maize	extracellular	73.87	73.05
CDY02184	Canola	plasma membrane	75.0	72.87
CDY58691	Canola	plasma membrane	75.0	72.71
Bra012996.1-P	Field mustard	plasma membrane	74.77	72.65
CDX87193	Canola	plasma membrane	74.55	72.59
PGSC0003DMT400082702	Potato	extracellular	40.54	72.58
CDY16831	Canola	plasma membrane	74.77	72.49
EER90860	Sorghum	extracellular, golgi, plasma membrane	72.97	72.16
Bra035951.1-P	Field mustard	plasma membrane	74.1	71.83
Zm00001d034049_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	72.97	71.68
TraesCS6D01G364400.1	Wheat	extracellular	70.95	70.47
TraesCS5B01G396900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	72.07	70.02
TraesCS5A01G392000.1	Wheat	endoplasmic reticulum, extracellular, golgi	71.85	69.8
TraesCS5D01G401900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	71.85	69.8
Os07t0604300-01	Rice	extracellular	70.05	69.73
EER97506	Sorghum	extracellular, plasma membrane	71.85	69.65
TraesCS6A01G379800.1	Wheat	extracellular	69.82	69.35
TraesCS6B01G418400.1	Wheat	extracellular	69.82	69.35
GSMUA_Achr2P06240_001	Banana	mitochondrion	73.87	68.76
EER90859	Sorghum	extracellular	65.77	68.71
HORVU5Hr1G095910.12	Barley	extracellular, vacuole	71.17	68.7
PGSC0003DMT400003723	Potato	extracellular	66.22	67.74
Zm00001d022081_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	69.37	66.96
PGSC0003DMT400002674	Potato	plasma membrane	65.32	66.82
OQU92393	Sorghum	extracellular	68.47	65.94
Os03t0416300-01	Rice	extracellular	67.12	65.07
Bra029346.1-P	Field mustard	cytosol, plasma membrane, plastid	18.02	65.04
PGSC0003DMT400063318	Potato	cytosol	59.01	64.85
TraesCS3A01G409900.1	Wheat	plastid	39.64	63.54
CDY42842	Canola	cytosol	17.34	63.11
TraesCS4A01G231200.1	Wheat	extracellular	65.32	63.04
TraesCS2A01G175100.1	Wheat	extracellular	64.19	62.91
TraesCS2D01G182500.1	Wheat	golgi	64.19	62.64
TraesCS4D01G082700.1	Wheat	extracellular	64.41	62.04
TraesCS4B01G084800.1	Wheat	extracellular	63.51	61.98
HORVU4Hr1G014530.1	Barley	extracellular	64.19	61.56
TraesCS2B01G201500.1	Wheat	plasma membrane	63.06	61.0
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	61.71	60.22
HORVU2Hr1G033070.14	Barley	mitochondrion	63.29	59.79
KRH56778	Soybean	extracellular	27.93	59.33
Os10t0497700-01	Rice	extracellular	56.76	59.29
TraesCS3B01G443000.1	Wheat	cytosol, plasma membrane, vacuole	55.18	58.61
TraesCS5D01G402000.1	Wheat	extracellular	29.73	57.89
HORVU5Hr1G067940.1	Barley	plasma membrane, plastid	61.26	57.63
TraesCS5B01G397000.2	Wheat	extracellular	29.28	57.27
HORVU5Hr1G096010.13	Barley	endoplasmic reticulum	35.14	55.91
TraesCS3D01G404800.2	Wheat	plasma membrane	56.53	54.92
PGSC0003DMT400004139	Potato	extracellular	18.69	40.29
PGSC0003DMT400081003	Potato	cytosol	8.78	33.62
PGSC0003DMT400002667	Potato	cytosol, golgi, peroxisome	10.81	30.77
PGSC0003DMT400065836	Potato	cytosol	26.8	25.37
PGSC0003DMT400002688	Potato	cytosol	6.08	20.93
PGSC0003DMT400037398	Potato	vacuole	29.28	19.61
PGSC0003DMT400065840	Potato	endoplasmic reticulum, extracellular, plasma membrane	28.6	19.51
PGSC0003DMT400002678	Potato	vacuole	27.25	18.31
PGSC0003DMT400005270	Potato	cytosol	28.15	17.46

Protein Annotations

EntrezGene:102600020	MapMan:21.1.2.2	InterPro:COBRA_pln	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987
GO:GO:0010215	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007
UniProt:M1CIV4	PFAM:PD140986	PFAM:PF04833	EnsemblPlantsGene:PGSC0003DMG400026565	PGSC:PGSC0003DMG400026565	EnsemblPlants:PGSC0003DMT400068328
PIRSF:PIRSF038122	PFscan:PS51257	PANTHER:PTHR31673	PANTHER:PTHR31673:SF3	SignalP:SignalP-noTM	UniParc:UPI00029677F7
RefSeq:XP_006365658.1	SEG:seg	:	:	:	:

Description

Protein COBRA [Source:PGSC_GENE;Acc:PGSC0003DMG400026565]

Coordinates

chr2:-:25001720..25005439

Molecular Weight (calculated)

50049.0 Da

IEP (calculated)

8.344

GRAVY (calculated)

-0.152

Length

444 amino acids

Sequence
(BLAST)

001: MEFFRSTILL VFLLSCFSFS ATDAFDALDP NGNITIKWDV ISWSPDGYVA VVTMFNFQQY RHIQAPGWTL GWTWAKKEVI WGMVGAQTTE QGDCSKFKGN
101: IPHCCKRDPT VIDLLPGTPY NQQIANCCKG GVINSWGQDP ETAVSSFQVS VGSAGTTNKT VRVPKNFTLK APGPGYTCGP AKVVKPTKFF TNDGRRVTQA
201: MMTWNITCTY SQFLAQKTPT CCVSLSSFYN DTIVPCPTCT CGCQKNGTQH GNCVDQDEPH LASVVSGLGK NNYAPLVQCT SHMCPIRIHW HVKLNYKEYW
301: RVKVTITNFN YNMNYTQWNL VVQHPNFDNL TQLFSFHYKS LTPYGAINDT AMLWGMKFYN DLLMQAGPLG NVQSELLFRK DMSTFTFEKG WAFPHRVYFN
401: GDNCVMPQPD SYPYMPNTGT VWKFSSLKLV VMLMLSTAFF FATV

Best Arabidopsis Sequence Match ( AT5G60920.1 )
(BLAST)

001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA

Arabidopsis Description

COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.