Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 3
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24004 | Canola | cytosol, nucleus, plastid | 29.88 | 57.65 |
| TraesCS5D01G402000.1 | Wheat | extracellular | 64.02 | 46.05 |
| TraesCS5B01G397000.2 | Wheat | extracellular | 62.8 | 45.37 |
| HORVU5Hr1G096010.13 | Barley | endoplasmic reticulum | 75.0 | 44.09 |
| CDY29033 | Canola | cytosol | 43.29 | 39.01 |
| Zm00001d013256_P001 | Maize | extracellular | 92.07 | 33.63 |
| KRH56778 | Soybean | extracellular | 42.07 | 33.01 |
| EER90860 | Sorghum | extracellular, golgi, plasma membrane | 90.24 | 32.96 |
| Zm00001d034049_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 87.8 | 31.86 |
| KRH72178 | Soybean | mitochondrion | 67.68 | 30.08 |
| TraesCS6D01G364400.1 | Wheat | extracellular | 81.71 | 29.98 |
| HORVU5Hr1G095910.12 | Barley | extracellular, vacuole | 82.93 | 29.57 |
| TraesCS5A01G392000.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 82.32 | 29.54 |
| TraesCS5B01G396900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 82.32 | 29.54 |
| TraesCS5D01G401900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 82.32 | 29.54 |
| TraesCS6A01G379800.1 | Wheat | extracellular | 79.88 | 29.31 |
| TraesCS6B01G418400.1 | Wheat | extracellular | 78.66 | 28.86 |
| GSMUA_Achr4P01440_001 | Banana | extracellular, plasma membrane | 78.05 | 28.01 |
| Solyc02g065770.2.1 | Tomato | extracellular | 75.61 | 27.93 |
| PGSC0003DMT400068328 | Potato | extracellular | 75.61 | 27.93 |
| VIT_14s0083g01160.t01 | Wine grape | vacuole | 73.78 | 27.75 |
| PGSC0003DMT400003470 | Potato | extracellular | 75.61 | 27.74 |
| GSMUA_Achr1P24500_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 77.44 | 27.73 |
| Solyc02g089120.2.1 | Tomato | extracellular | 74.39 | 27.29 |
| CDY70289 | Canola | extracellular | 65.85 | 27.2 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 75.61 | 27.19 |
| CDX87193 | Canola | plasma membrane | 75.0 | 26.97 |
| CDY16831 | Canola | plasma membrane | 75.0 | 26.86 |
| KRH01360 | Soybean | extracellular, golgi, plasma membrane | 73.17 | 26.79 |
| AT5G60920.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 74.39 | 26.75 |
| KRH45084 | Soybean | extracellular, golgi, plasma membrane | 72.56 | 26.56 |
| CDX85277 | Canola | extracellular | 70.12 | 26.38 |
| Bra025406.1-P | Field mustard | extracellular | 70.12 | 26.38 |
| CDX86358 | Canola | extracellular | 70.12 | 26.38 |
| KRH54735 | Soybean | endoplasmic reticulum | 73.17 | 26.32 |
| Bra035951.1-P | Field mustard | plasma membrane | 73.17 | 26.2 |
| CDY02184 | Canola | plasma membrane | 72.56 | 26.04 |
| Bra012996.1-P | Field mustard | plasma membrane | 72.56 | 26.04 |
| GSMUA_Achr2P06240_001 | Banana | mitochondrion | 75.61 | 26.0 |
| CDY58691 | Canola | plasma membrane | 72.56 | 25.98 |
| KRH63181 | Soybean | endoplasmic reticulum | 71.95 | 25.88 |
| KRH03165 | Soybean | extracellular | 71.34 | 25.77 |
| AT3G29810.1 | Thale cress | extracellular | 67.68 | 25.17 |
| KRG93684 | Soybean | extracellular, vacuole | 69.51 | 25.11 |
| Bra040587.1-P | Field mustard | extracellular | 67.07 | 25.06 |
| Os10t0497700-01 | Rice | extracellular | 64.02 | 24.71 |
| Zm00001d047276_P001 | Maize | plasma membrane | 67.68 | 24.67 |
| Bra039163.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 68.29 | 24.62 |
| AT3G02210.1 | Thale cress | extracellular | 67.68 | 24.56 |
| CDY60470 | Canola | plasma membrane | 68.29 | 24.45 |
| CDY43250 | Canola | plasma membrane | 67.68 | 24.29 |
| KRH18352 | Soybean | plasma membrane | 67.68 | 24.24 |
| Zm00001d022082_P001 | Maize | extracellular, plasma membrane, vacuole | 64.02 | 23.49 |
| Zm00001d022081_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 64.63 | 23.04 |
| CDY14723 | Canola | cytosol | 42.68 | 22.01 |
| Zm00001d002803_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 48.17 | 18.12 |
| Zm00001d028826_P001 | Maize | plasma membrane | 30.49 | 7.5 |
| Zm00001d021661_P001 | Maize | mitochondrion | 30.49 | 7.37 |
| Zm00001d007208_P001 | Maize | extracellular, plasma membrane, vacuole | 29.27 | 7.34 |
| CDY42842 | Canola | cytosol | 2.44 | 3.28 |
| Bra029346.1-P | Field mustard | cytosol, plasma membrane, plastid | 1.22 | 1.63 |
Protein Annotations
| EnsemblPlants:Zm00001d031479_P001 | EnsemblPlants:Zm00001d031479_T001 | EnsemblPlantsGene:Zm00001d031479 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0010215 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 |
| InterPro:COBRA_pln | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF3 | PFAM:PD140986 | PFAM:PF04833 | ProteinID:ONM02935.1 |
| UniParc:UPI00084269C9 | UniProt:A0A1D6KJ10 | MapMan:21.1.2.2 | : | : | : |
Description
Protein COBRA
Coordinates
chr1:-:191382562..191383508
Molecular Weight (calculated)
18035.8 Da
IEP (calculated)
10.042
GRAVY (calculated)
-0.321
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MFNYQQFRHI GAPGWQLGWT WAKKEVIWSM VGAQTTEQGD CSKFKGNTPH CCKKDPTIVD LLPGTPYNMQ IANCCKAGVI NTFNQDPANV ASSFQISFGL
101: AGTTNKTVKV PKNFTLKTPG PGYTCGRAIV GRPTKFLSTD GRRVTQALRV EVQPHHIIQS VPIP
101: AGTTNKTVKV PKNFTLKTPG PGYTCGRAIV GRPTKFLSTD GRRVTQALRV EVQPHHIIQS VPIP
001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL
Arabidopsis Description
COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.