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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 4
  • plasma membrane 5
  • golgi 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:plasma membrane
Predotar:plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:vacuole
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY66895 Canola cytosol 12.47 100.0
Bra012996.1-P Field mustard plasma membrane 99.78 99.78
CDY58691 Canola plasma membrane 99.12 98.91
CDY16831 Canola plasma membrane 94.75 94.54
CDX87193 Canola plasma membrane 93.87 94.08
AT5G60920.1 Thale cress endoplasmic reticulum, plasma membrane, plastid 93.65 93.86
CDY42842 Canola cytosol 21.44 80.33
PGSC0003DMT400068328 Potato extracellular 72.87 75.0
VIT_17s0000g05070.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 74.84 75.0
Solyc02g089120.2.1 Tomato extracellular 73.3 74.94
Solyc02g065770.2.1 Tomato extracellular 72.65 74.77
PGSC0003DMT400003470 Potato extracellular 73.09 74.72
KRH54735 Soybean endoplasmic reticulum 74.4 74.56
KRH63181 Soybean endoplasmic reticulum 74.18 74.34
KRH03165 Soybean extracellular 72.87 73.35
CDX86358 Canola extracellular 69.8 73.17
GSMUA_Achr4P01440_001 Banana extracellular, plasma membrane 73.09 73.09
CDY70289 Canola extracellular 63.46 73.05
GSMUA_Achr1P24500_001 Banana endoplasmic reticulum, plasma membrane, vacuole 73.09 72.93
Zm00001d031479_P001 Maize cytosol, mitochondrion 26.04 72.56
CDX85277 Canola extracellular 68.71 72.02
Os03t0754500-00 Rice extracellular 32.82 70.09
Os07t0604300-01 Rice extracellular 67.4 69.06
Os05t0386800-01 Rice extracellular 68.93 68.93
Zm00001d013256_P001 Maize extracellular 67.18 68.37
EER90860 Sorghum extracellular, golgi, plasma membrane 66.96 68.15
CDY60470 Canola plasma membrane 68.05 67.9
CDY43250 Canola plasma membrane 67.61 67.61
GSMUA_Achr2P06240_001 Banana mitochondrion 70.46 67.51
Zm00001d034049_P002 Maize endoplasmic reticulum, plasma membrane, vacuole 66.74 67.48
EER97506 Sorghum extracellular, plasma membrane 66.96 66.81
TraesCS6D01G364400.1 Wheat extracellular 64.77 66.22
CDX90983 Canola extracellular 62.58 65.75
TraesCS6A01G379800.1 Wheat extracellular 64.11 65.55
TraesCS6B01G418400.1 Wheat extracellular 63.9 65.32
TraesCS5B01G396900.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 65.21 65.21
TraesCS5A01G392000.1 Wheat endoplasmic reticulum, extracellular, golgi 65.21 65.21
TraesCS5D01G401900.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 65.21 65.21
EER90859 Sorghum extracellular 60.39 64.94
CDY24004 Canola cytosol, nucleus, plastid 12.04 64.71
OQU92393 Sorghum extracellular 64.77 64.21
Zm00001d022081_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 64.55 64.13
HORVU5Hr1G095910.12 Barley extracellular, vacuole 64.11 63.7
Os03t0416300-01 Rice extracellular 63.24 63.1
CDY02181 Canola endoplasmic reticulum, extracellular 28.23 62.62
CDX85543 Canola extracellular, plasma membrane, vacuole 62.14 62.28
CDX69511 Canola plasma membrane 61.71 61.98
TraesCS3A01G409900.1 Wheat plastid 37.42 61.73
CDY58695 Canola extracellular 27.79 61.65
TraesCS4A01G231200.1 Wheat extracellular 61.93 61.52
TraesCS4D01G082700.1 Wheat extracellular 61.93 61.39
CDY26444 Canola plastid 49.02 61.2
HORVU4Hr1G014530.1 Barley extracellular 61.71 60.91
TraesCS4B01G084800.1 Wheat extracellular 60.61 60.88
TraesCS2A01G175100.1 Wheat extracellular 59.96 60.49
TraesCS2D01G182500.1 Wheat golgi 59.3 59.56
Os10t0497700-01 Rice extracellular 54.49 58.59
HORVU2Hr1G033070.14 Barley mitochondrion 60.18 58.51
KRH56778 Soybean extracellular 26.7 58.37
TraesCS2B01G201500.1 Wheat plasma membrane 58.42 58.17
CDY29033 Canola cytosol 22.76 57.14
TraesCS3B01G443000.1 Wheat cytosol, plasma membrane, vacuole 51.86 56.7
TraesCS5D01G402000.1 Wheat extracellular 28.01 56.14
HORVU5Hr1G067940.1 Barley plasma membrane, plastid 57.55 55.72
TraesCS5B01G397000.2 Wheat extracellular 27.57 55.51
HORVU5Hr1G096010.13 Barley endoplasmic reticulum 32.82 53.76
TraesCS3D01G404800.2 Wheat plasma membrane 53.17 53.17
CDX93481 Canola plasma membrane 47.26 49.2
CDY31063 Canola plasma membrane 46.17 48.62
CDY20671 Canola extracellular, plasma membrane, vacuole 46.61 46.81
CDY26445 Canola cytosol 16.63 44.97
CDY14723 Canola cytosol 28.45 40.88
CDX94950 Canola nucleus 43.76 35.09
CDX70627 Canola cytosol, nucleus, plasma membrane 62.58 33.33
CDX87194 Canola mitochondrion 14.66 32.06
CDY57659 Canola cytosol 7.66 22.88
CDY09102 Canola cytosol 12.04 21.07
CDY19626 Canola mitochondrion 18.38 20.39
CDY34424 Canola plasma membrane 27.13 18.82
CDY32210 Canola plasma membrane 27.13 18.79
CDY00037 Canola plasma membrane 26.91 18.58
CDY49611 Canola plasma membrane 26.91 18.58
CDY36030 Canola vacuole 25.6 18.06
CDX89278 Canola extracellular, golgi, vacuole 26.04 17.95
CDY52722 Canola endoplasmic reticulum, plasma membrane, vacuole 26.04 17.89
CDX82237 Canola endoplasmic reticulum, vacuole 26.04 17.81
CDY29275 Canola extracellular, plasma membrane, vacuole 25.82 17.74
CDY34980 Canola endoplasmic reticulum, plasma membrane, vacuole 25.82 17.69
CDX97377 Canola endoplasmic reticulum, golgi, vacuole 25.6 17.59
CDY14283 Canola endoplasmic reticulum, plasma membrane, vacuole 25.6 17.13
CDY55591 Canola plasma membrane 26.26 14.42
CDY43072 Canola plasma membrane 26.26 14.2
Protein Annotations
MapMan:21.1.2.2GO:A0A078ENA4EnsemblPlants:CDY02184ProteinID:CDY02184ProteinID:CDY02184.1InterPro:COBRA_pln
GO:GO:0005575GO:GO:0008150GO:GO:0009987GO:GO:0010215GO:GO:0016020GO:GO:0016043
GO:GO:0016049GO:GO:0031225GO:GO:0040007EnsemblPlantsGene:GSBRNA2T00113592001PFAM:PD140986PFAM:PF04833
PIRSF:PIRSF038122PANTHER:PTHR31673PANTHER:PTHR31673:SF3TMHMM:TMhelixUniParc:UPI0004EEBAB8SEG:seg
Description
BnaA03g39830D
Coordinates
chrLK031932:+:563165..565705
Molecular Weight (calculated)
51095.2 Da
IEP (calculated)
8.551
GRAVY (calculated)
-0.149
Length
457 amino acids
Sequence
(BLAST)
001: MESFISRSTS IVSKMSFLAV GIVFLVSSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIPSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNLPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVLNSWVQ DPGTAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTQ
201: FVTPDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNKT ESGACLDPDT PHLASVVSPP TKKGTILPPL VQCTRHLCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYS QWNMVAQHPN LDNITQIFSF NYKSLSPYAG LNDTAMLWGM KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDAYPFLP NGGFRTEFSV FSAVLLPVLL VFFLFSA
Best Arabidopsis Sequence Match ( AT5G60920.1 )
(BLAST)
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.