CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85543	Canola	extracellular, plasma membrane, vacuole	97.7	93.2
AT5G15630.1	Thale cress	extracellular, plasma membrane, vacuole	91.49	92.34
CDX69511	Canola	plasma membrane	94.48	90.33
CDY26444	Canola	plastid	72.64	86.34
CDY66895	Canola	cytosol	11.03	84.21
KRG93686	Soybean	extracellular, plasma membrane, vacuole	79.08	79.81
KRH45086	Soybean	plasma membrane	78.62	79.35
VIT_14s0083g01150.t01	Wine grape	plasma membrane	78.16	78.89
KRH01361	Soybean	extracellular, plasma membrane, vacuole	77.93	78.65
PGSC0003DMT400082702	Potato	extracellular	44.83	78.63
PGSC0003DMT400003723	Potato	extracellular	78.16	78.34
KRH18350	Soybean	cytosol	31.72	77.53
PGSC0003DMT400002674	Potato	plasma membrane	76.78	76.96
CDY24004	Canola	cytosol, nucleus, plastid	12.64	64.71
CDY70289	Canola	extracellular	58.85	64.48
CDX86358	Canola	extracellular	64.14	63.99
CDX85277	Canola	extracellular	63.91	63.76
CDY26445	Canola	cytosol	24.37	62.72
CDY58691	Canola	plasma membrane	65.98	62.66
CDY02184	Canola	plasma membrane	65.75	62.58
CDX87193	Canola	plasma membrane	64.6	61.62
CDY16831	Canola	plasma membrane	64.6	61.35
CDY60470	Canola	plasma membrane	63.22	60.04
CDY43250	Canola	plasma membrane	62.76	59.74
CDY29033	Canola	cytosol	23.22	55.49
CDY42842	Canola	cytosol	15.4	54.92
CDY02181	Canola	endoplasmic reticulum, extracellular	25.52	53.88
CDY58695	Canola	extracellular	25.06	52.91
CDX93481	Canola	plasma membrane	48.05	47.61
CDX70627	Canola	cytosol, nucleus, plasma membrane	93.79	47.55
CDY31063	Canola	plasma membrane	47.13	47.23
CDY20671	Canola	extracellular, plasma membrane, vacuole	47.13	45.05
CDY14723	Canola	cytosol	29.2	39.94
CDX94950	Canola	nucleus	45.52	34.74
CDX87194	Canola	mitochondrion	12.87	26.79
CDY57659	Canola	cytosol	8.97	25.49
CDY19626	Canola	mitochondrion	21.61	22.82
CDY09102	Canola	cytosol	13.56	22.61
CDY52722	Canola	endoplasmic reticulum, plasma membrane, vacuole	29.66	19.4
CDY34980	Canola	endoplasmic reticulum, plasma membrane, vacuole	28.97	18.89
CDY49611	Canola	plasma membrane	28.74	18.88
CDY36030	Canola	vacuole	28.05	18.83
CDY34424	Canola	plasma membrane	28.51	18.82
CDY32210	Canola	plasma membrane	28.51	18.79
CDY00037	Canola	plasma membrane	28.51	18.73
CDX82237	Canola	endoplasmic reticulum, vacuole	28.74	18.71
CDX89278	Canola	extracellular, golgi, vacuole	28.05	18.4
CDX97377	Canola	endoplasmic reticulum, golgi, vacuole	27.82	18.2
CDY29275	Canola	extracellular, plasma membrane, vacuole	27.59	18.05
CDY14283	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.82	17.72
CDY55591	Canola	plasma membrane	29.43	15.38
CDY43072	Canola	plasma membrane	29.2	15.03

Protein Annotations

MapMan:21.1.2.2	GO:A0A078DUU2	EnsemblPlants:CDX90983	ProteinID:CDX90983	ProteinID:CDX90983.1	InterPro:COBRA_pln
GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020	GO:GO:0016043
GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	EnsemblPlantsGene:GSBRNA2T00151739001	PFAM:PD140986	PFAM:PF04833
PIRSF:PIRSF038122	PANTHER:PTHR31673	PANTHER:PTHR31673:SF2	SignalP:SignalP-noTM	UniParc:UPI0004EE92EE	SEG:seg

Description

BnaC02g06140D

Coordinates

chrLK031865:-:102290..104334

Molecular Weight (calculated)

48756.7 Da

IEP (calculated)

9.024

GRAVY (calculated)

-0.130

Length

435 amino acids

Sequence
(BLAST)

001: MRLFFCFCFF FMIIFSTSSA YDPLDPNGNI TLKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWAW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKIPTVVDL LPGVPYNQQF SNCCKGGVVG AWGQDPSSAV SQFQVSVGLA GTTNKTVKLP KNFTLLGPGP GYSCGPAKIV PSTVFFTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PRKDNAPLLQ CTHHMCPVRV HWHVKTNYKE YWRVKIAITN
301: FNYRMNHTLW TLAVQHPNLN NVTQVFSFDY KSVAPYGSIN DTGMFFGTKF YNDLLMEAGP SGNVQSEVLL QKDEKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDAYPFLPNS ARANLASLST LSLTVLLLVV FISSL

Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)

001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W

Arabidopsis Description

COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.