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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 7
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:plasma membrane
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400002674 Potato plasma membrane 100.0 57.14
Solyc03g070440.2.1 Tomato extracellular 96.37 55.45
Bra012993.1-P Field mustard endoplasmic reticulum, extracellular 45.97 55.34
CDY02181 Canola endoplasmic reticulum, extracellular 45.97 55.34
HORVU2Hr1G033080.1 Barley extracellular 40.73 54.89
CDY58695 Canola extracellular 44.35 53.4
AT5G60950.1 Thale cress endoplasmic reticulum 43.15 52.45
PGSC0003DMT400003723 Potato extracellular 86.69 49.54
VIT_14s0083g01150.t01 Wine grape plasma membrane 81.85 47.1
KRH45086 Soybean plasma membrane 81.45 46.87
KRH01361 Soybean extracellular, plasma membrane, vacuole 81.05 46.64
KRG93686 Soybean extracellular, plasma membrane, vacuole 80.65 46.4
AT5G15630.1 Thale cress extracellular, plasma membrane, vacuole 79.03 45.48
CDX90983 Canola extracellular 78.63 44.83
CDY26444 Canola plastid 66.13 44.81
Bra023528.1-P Field mustard extracellular, plasma membrane, vacuole 77.82 44.47
GSMUA_Achr4P03210_001 Banana endoplasmic reticulum, extracellular, plasma membrane 77.82 43.18
CDX69511 Canola plasma membrane 77.82 42.42
CDX85543 Canola extracellular, plasma membrane, vacuole 77.42 42.11
PGSC0003DMT400063055 Potato extracellular, mitochondrion 76.61 41.76
EER99679 Sorghum plasma membrane 74.6 41.48
GSMUA_Achr4P14440_001 Banana plasma membrane 76.21 41.27
PGSC0003DMT400068328 Potato extracellular 72.58 40.54
PGSC0003DMT400003470 Potato extracellular 72.98 40.49
TraesCS2A01G175000.1 Wheat plasma membrane 72.98 40.31
Zm00001d022082_P001 Maize extracellular, plasma membrane, vacuole 72.58 40.27
TraesCS2D01G182400.1 Wheat plasma membrane 72.58 40.27
TraesCS2B01G201400.1 Wheat plasma membrane 72.58 40.18
Bra008684.1-P Field mustard extracellular 62.5 40.05
EER94687 Sorghum extracellular 71.37 39.69
Zm00001d047276_P001 Maize plasma membrane 71.37 39.33
TraesCS5D01G107900.1 Wheat extracellular 70.56 38.98
TraesCS5A01G095200.1 Wheat extracellular 70.56 38.98
TraesCS5B01G101400.1 Wheat extracellular 70.56 38.89
Os07t0604400-00 Rice extracellular 70.16 38.58
HORVU0Hr1G004650.3 Barley mitochondrion 63.31 37.83
Os03t0416200-01 Rice extracellular, golgi, plasma membrane 70.56 37.39
KRH63180 Soybean plasma membrane 67.34 36.46
KRH54737 Soybean plasma membrane 66.13 35.81
HORVU2Hr1G033060.13 Barley mitochondrion 63.31 35.12
PGSC0003DMT400063318 Potato cytosol 54.03 33.17
HORVU3Hr1G007580.2 Barley extracellular 48.79 32.27
CDX87194 Canola mitochondrion 25.0 29.67
CDX70627 Canola cytosol, nucleus, plasma membrane 79.84 23.08
HORVU3Hr1G009960.1 Barley plastid 20.16 22.94
PGSC0003DMT400065836 Potato cytosol 29.84 15.78
PGSC0003DMT400065840 Potato endoplasmic reticulum, extracellular, plasma membrane 32.26 12.29
PGSC0003DMT400037398 Potato vacuole 31.85 11.92
TraesCS3D01G047900.1 Wheat plastid 11.69 11.65
PGSC0003DMT400002678 Potato vacuole 30.65 11.5
TraesCSU01G047200.1 Wheat plastid 10.08 10.78
PGSC0003DMT400005270 Potato cytosol 27.82 9.64
PGSC0003DMT400002667 Potato cytosol, golgi, peroxisome 3.63 5.77
PGSC0003DMT400004139 Potato extracellular 1.61 1.94
PGSC0003DMT400081003 Potato cytosol 0.81 1.72
KRH18350 Soybean cytosol 0.0 0.0
VIT_17s0000g05050.t01 Wine grape cytosol 0.0 0.0
PGSC0003DMT400002688 Potato cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:PGSC0003DMT400082702EnsemblPlantsGene:PGSC0003DMG400032772GO:GO:0005575GO:GO:0008150GO:GO:0009987GO:GO:0010215
GO:GO:0016020GO:GO:0016043GO:GO:0016049GO:GO:0031225GO:GO:0040007InterPro:COBRA_pln
PANTHER:PTHR31673PANTHER:PTHR31673:SF2PFAM:PD140986PFAM:PF04833PGSC:PGSC0003DMG400032772SignalP:SignalP-noTM
TMHMM:TMhelixUniParc:UPI00029642DBUniProt:M1D643MapMan:21.1.2.2::
Description
Protein COBRA [Source:PGSC_GENE;Acc:PGSC0003DMG400032772]
Coordinates
chr00:-:40383243..40384864
Molecular Weight (calculated)
27434.2 Da
IEP (calculated)
8.851
GRAVY (calculated)
-0.099
Length
248 amino acids
Sequence
(BLAST)
001: MRTYLITLVG LLFVLFSYAA AYDPLDPNGN ITIKWDVMSW TPDGYVAVVT MNNFQMYRHI MSPGWTLGWT WAKKEVIWTM IGAQATEQGD CSKFKGNIPH
101: CCKKTPTVVD MLPGVPYNQQ FTNCCKGGVL ASWGQDPQSS VSAFQVSVGQ AGTTNKTVKL PKNFTLLGPG PGYTCSPAKI VPPTKFFTAD LRRKTQALMT
201: WNVTCTYSQF VAQKHPKCCV SLSTFYNETI TSCPSCACGC ENKHKCIK
Best Arabidopsis Sequence Match ( AT3G02210.1 )
(BLAST)
001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL
Arabidopsis Description
COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.