Factsheet for PGSC0003DMT400037398

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 8
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006450.2.1	Tomato	golgi, plasma membrane, vacuole	96.38	95.23
PGSC0003DMT400002688	Potato	cytosol	15.23	78.29
PGSC0003DMT400002678	Potato	vacuole	73.91	74.13
VIT_10s0116g00620.t01	Wine grape	extracellular	58.07	58.87
CDY19626	Canola	mitochondrion	36.05	58.01
VIT_19s0177g00160.t01	Wine grape	plasma membrane	57.01	57.71
Bra035768.1-P	Field mustard	mitochondrion, peroxisome, plastid	33.03	57.63
CDY36030	Canola	vacuole	55.96	57.25
AT3G20580.1	Thale cress	endoplasmic reticulum, vacuole	56.86	56.1
Bra001795.1-P	Field mustard	endoplasmic reticulum, vacuole	55.81	55.39
CDX82237	Canola	endoplasmic reticulum, vacuole	55.66	55.24
Bra023941.1-P	Field mustard	plasma membrane	55.51	54.76
PGSC0003DMT400065836	Potato	cytosol	38.46	54.37
GSMUA_Achr4P33540_001	Banana	vacuole	54.15	53.98
GSMUA_Achr3P21560_001	Banana	plasma membrane	53.24	53.81
AT4G27110.1	Thale cress	extracellular	54.0	53.59
CDX97377	Canola	endoplasmic reticulum, golgi, vacuole	53.54	53.38
CDY57659	Canola	cytosol	12.22	52.94
KRH22248	Soybean	golgi, vacuole	53.09	52.85
Bra026378.1-P	Field mustard	extracellular, golgi, vacuole	51.43	52.22
CDY29275	Canola	extracellular, plasma membrane, vacuole	52.34	52.18
KRH27088	Soybean	mitochondrion	52.64	52.01
CDY14283	Canola	endoplasmic reticulum, plasma membrane, vacuole	53.54	51.98
HORVU7Hr1G028350.1	Barley	golgi, mitochondrion, plasma membrane	52.64	51.93
CDX89278	Canola	extracellular, golgi, vacuole	51.89	51.89
Bra010411.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	51.89	51.89
TraesCS7A01G136600.1	Wheat	mitochondrion	52.49	51.63
PGSC0003DMT400065840	Potato	endoplasmic reticulum, extracellular, plasma membrane	50.68	51.61
TraesCS7D01G136500.1	Wheat	mitochondrion	52.34	51.48
TraesCS7B01G037700.1	Wheat	mitochondrion	52.19	51.34
Zm00001d021661_P001	Maize	mitochondrion	52.19	51.03
KXG36369	Sorghum	mitochondrion	51.58	50.82
Os06t0685100-00	Rice	plasma membrane	52.34	50.81
PGSC0003DMT400005270	Potato	cytosol	52.94	49.02
CDY09102	Canola	cytosol	19.16	48.66
Bra020151.1-P	Field mustard	cytosol	18.4	47.1
CDY55591	Canola	plasma membrane	55.35	44.11
CDY43072	Canola	plasma membrane	55.35	43.43
PGSC0003DMT400082702	Potato	extracellular	11.92	31.85
PGSC0003DMT400002674	Potato	plasma membrane	19.46	29.72
PGSC0003DMT400003723	Potato	extracellular	19.31	29.49
PGSC0003DMT400068328	Potato	extracellular	19.61	29.28
PGSC0003DMT400003470	Potato	extracellular	19.16	28.41
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	18.4	26.81
PGSC0003DMT400063318	Potato	cytosol	15.84	25.99
PGSC0003DMT400004139	Potato	extracellular	6.94	22.33
PGSC0003DMT400081003	Potato	cytosol	3.02	17.24
PGSC0003DMT400002667	Potato	cytosol, golgi, peroxisome	3.77	16.03

Protein Annotations

EnsemblPlants:PGSC0003DMT400037398	EnsemblPlantsGene:PGSC0003DMG400014428	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31052	PANTHER:PTHR31052:SF2	PFAM:PD140986	PFAM:PF04833	PGSC:PGSC0003DMG400014428	SEG:seg
SignalP:SignalP-noTM	UniParc:UPI00029658AF	UniProt:M1B5B8	MapMan:21.1.2.2	:	:

Description

Protein COBRA [Source:PGSC_GENE;Acc:PGSC0003DMG400014428]

Coordinates

chr10:-:1360865..1364199

Molecular Weight (calculated)

73905.1 Da

IEP (calculated)

8.712

GRAVY (calculated)

-0.325

Length

663 amino acids

Sequence
(BLAST)

001: MKIPWMNLIN CIVLVVFCYS IEVCNGQDYG GEEVVKAAPP PAQENCDGVF VTYAFDNRER EYPFVKNVTA QAWAFTSMLT VINTGLFELK SWKVQVGFQH
101: NEVLISTDGA VAMGGDGFPV KTGKNGTVLA GFPQADLKTA IDTAGDFTQM AAQVKIKGTQ FGVPTKSTPM PKSINLLNDG YKCPAPKKFK TFMQMCCKKD
201: PKFKPKNTSI KFMERQNGDL SFTYDVLSAF ENKYQAQVTI DNISPLGRLD RWNLTWEWMR NEFIYSMKGA YTHKKDPSEC IYGPQGQYYK DFDFSVVMSC
301: QKKPVISDLP PEMENNDKLG KLPFCCKNGA LLPTTMNGTK ARSIFQMEVF KLPPDMNRTA LYPPQNWKIE GRVNPSYKCG PPIRVDPTGF PDPSKIGITL
401: NAVASWQITC NISRPQPKQA KCCVSFSAFY TDSVVPCNTC ACGCEQTSKC DGNAKPLPLP AQALLVPFQD REKLAKEWNR IKHLGAMPNK LPCPDNCGVS
501: INWHLESNYK TGWTARMTLF NWGNDPFVDW FTAVQMKKNI GDGYENVYSF NGTKLPQRTN TIFMQGLKGL TYLVGQVNGT NPNKDPKVPG KQQSVISFLK
601: KNTPNVNIEG GDGFPSKVIF NGEECALPPN FPKSHAAFKS QVGLLPAVLL ALLTFLLLTD QFH

Best Arabidopsis Sequence Match ( AT3G20580.1 )
(BLAST)

001: MRAIDVKTGM KIPWDVRYSL SLFIFLSSIL FLSNGQDYGM PGEDGGGGAE PPPEMAHCNG IFMSYNFGSR EREYPHVKNV TAQSWAFKST AMIVNAGREE
101: LKGWQMFIGF RHKELIVSAT GATPMDGDYP LDASNGTTFV GSPNMDLKTS IETAGDFTQI SANIEITGTL FGVSKAVTPM PRTIKLTNDG WECPAAKRKG
201: GSMHVCCKRN PKIKNKIGLK TKFAPRRYGD LNIVYDVLQS FDSNYLAQVT IDNDNPLGRL DRWNLTFEWM RGEFINTMRG AYTHKKDPSE CLYSKAGQYY
301: KDLDFSQVMN CQRKPAISDL PPEKKEDNMT GKLPFCCKNG TLLPPIMDPS KSRSMFQLQV FKLPPDLNRT ALYPPQHWKI DGVLNPQYKC GPPVRVDPSQ
401: FPDPSGLLAV TYAISSWQVV CNITKPKAQA SRCCVSFSAF YNNSAVPCNT CACGCNDIDT DTCNANSNPL LLPPDALLVP FDNRTLKAKA WAKQNHMPVP
501: KKLPCPDNCG VSINWHVSTD YKNGWTARLT VFNWRDFAFE DWFVAIDMGK AGPGYENVYS FNGTRVPPSN RTVIFQGLPG MNYLVGQVNG TNPLRDPPVP
601: GKQQSVISFT KKNIKGLNIP EGDGFPTKLF FNGEECALPK HFPKKSSGHR RGISVSMSFV FATIAAFALM MD

Arabidopsis Description

COBL10COBRA-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJU0]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.