Factsheet for VIT_19s0177g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 9
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0116g00620.t01	Wine grape	extracellular	67.79	67.89
GSMUA_Achr3P21560_001	Banana	plasma membrane	61.37	61.28
CDY19626	Canola	mitochondrion	38.47	61.16
Bra035768.1-P	Field mustard	mitochondrion, peroxisome, plastid	35.42	61.05
GSMUA_Achr4P33540_001	Banana	vacuole	61.53	60.6
CDY36030	Canola	vacuole	59.08	59.72
PGSC0003DMT400002678	Potato	vacuole	60.15	59.61
AT3G20580.1	Thale cress	endoplasmic reticulum, vacuole	60.76	59.23
PGSC0003DMT400002688	Potato	cytosol	11.6	58.91
CDX82237	Canola	endoplasmic reticulum, vacuole	59.54	58.38
Bra001795.1-P	Field mustard	endoplasmic reticulum, vacuole	59.39	58.23
Solyc07g064200.2.1	Tomato	extracellular, golgi, vacuole	54.5	58.05
Bra023941.1-P	Field mustard	plasma membrane	59.39	57.89
PGSC0003DMT400037398	Potato	vacuole	57.71	57.01
HORVU7Hr1G028350.1	Barley	golgi, mitochondrion, plasma membrane	58.32	56.85
TraesCS7A01G136600.1	Wheat	mitochondrion	58.32	56.68
Solyc10g006450.2.1	Tomato	golgi, plasma membrane, vacuole	58.02	56.63
TraesCS7B01G037700.1	Wheat	mitochondrion	58.02	56.38
TraesCS7D01G136500.1	Wheat	mitochondrion	58.02	56.38
VIT_05s0077g01470.t01	Wine grape	plasma membrane	55.11	55.45
KRH27088	Soybean	mitochondrion	56.79	55.44
KRH22248	Soybean	golgi, vacuole	56.18	55.26
CDX97377	Canola	endoplasmic reticulum, golgi, vacuole	56.03	55.19
AT4G27110.1	Thale cress	extracellular	56.18	55.09
Os06t0685100-00	Rice	plasma membrane	57.1	54.76
Zm00001d021661_P001	Maize	mitochondrion	56.34	54.42
KXG36369	Sorghum	mitochondrion	55.88	54.38
Bra010411.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	54.96	54.3
CDX89278	Canola	extracellular, golgi, vacuole	54.66	54.0
Bra026378.1-P	Field mustard	extracellular, golgi, vacuole	53.74	53.91
CDY29275	Canola	extracellular, plasma membrane, vacuole	54.66	53.83
CDY14283	Canola	endoplasmic reticulum, plasma membrane, vacuole	56.03	53.73
VIT_07s0005g01020.t01	Wine grape	plasma membrane	51.45	52.09
CDY09102	Canola	cytosol	20.46	51.34
Bra020151.1-P	Field mustard	cytosol	19.54	49.42
CDY57659	Canola	cytosol	11.45	49.02
CDY55591	Canola	plasma membrane	59.24	46.63
CDY43072	Canola	plasma membrane	59.39	46.04
VIT_14s0083g01150.t01	Wine grape	plasma membrane	19.08	29.0
VIT_12s0035g00630.t01	Wine grape	extracellular, plasma membrane	18.17	27.61
VIT_03s0038g01420.t01	Wine grape	extracellular, plasma membrane	10.53	27.6
VIT_14s0083g01160.t01	Wine grape	vacuole	17.86	26.83
VIT_17s0000g05070.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	17.71	25.44
VIT_17s0000g05050.t01	Wine grape	cytosol	2.29	25.0
VIT_03s0038g01430.t01	Wine grape	mitochondrion	5.5	21.82
VIT_17s0000g05060.t01	Wine grape	plasma membrane	18.93	13.32

Protein Annotations

EntrezGene:100243454	wikigene:100243454	MapMan:21.1.2.2	ProteinID:CCB48803	ProteinID:CCB48803.1	InterPro:COBRA_pln
UniProt:F6H9B0	EMBL:FN595498	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	EntrezGene:LOC100243454
wikigene:LOC100243454	PFAM:PD140986	PFAM:PF04833	PANTHER:PTHR31052	PANTHER:PTHR31052:SF2	SignalP:SignalP-noTM
UniParc:UPI00015C7D10	ArrayExpress:VIT_19s0177g00160	EnsemblPlantsGene:VIT_19s0177g00160	EnsemblPlants:VIT_19s0177g00160.t01	unigene:Vvi.21093	RefSeq:XP_002279050
RefSeq:XP_002279050.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:+:5992672..5995021

Molecular Weight (calculated)

73488.4 Da

IEP (calculated)

7.276

GRAVY (calculated)

-0.337

Length

655 amino acids

Sequence
(BLAST)

001: MKIPWNIVLF SCVLLFYISP KVQVCRGQDE DIDAPPPLPL EEEECNGIFL SYTFISRQKA FPRLKNASAQ AWAFKSTATV MNTGLDELKA WKIFIGFQHE
101: EILVSADGAV IADGDDFPAA VGNGTYLSGY PQADLKTSVE TASDLNQMQV QIPMTGTQFG LKPPAVPMPR TIRLENDGYK CPNPTRRGSS MHVCCAKDPK
201: YKAREEKSTK FSPRRNGDLS FSYDVLQASD SNYLAQVTID NKNPIGRLDH WNLTWEWMRG EFIYNMRGAF TRKKDSSECI YGEAGQYYKT FDFSAVMNCE
301: KRPVIVDLPA DRAKDEKVGN LPYCCRNGSL LPSTMDVSRS RSVFQLQVYK LPPDLNRTAL FPPQNWEVDG VLNPHYKCGP PIRVDPTEFP EPSGLQSTVI
401: AVASWQVVCN ITRPRAKHSR CCVSFSAFYN DSVVPCNTCA CGCEESDTCS ADANPLLLPS EALLVPFDNR TARAKAWAKV KHYPVPDPLP CPDNCRVSIN
501: WHIYTDYRTG WTARISIFNW DDVIFEDWFG AIVMEKTYPG YENVYSFNGT KLPQLNNTIF FEGLPGLNYL MGETNGTNPK RDPRVPGKQQ SIISFTKKQT
601: PGINLARGDG FPSRVFFNGE ECSLPAQLPL RGGQSRTHVS FLPVVFLTVV IWGLH

Best Arabidopsis Sequence Match ( AT3G20580.1 )
(BLAST)

001: MRAIDVKTGM KIPWDVRYSL SLFIFLSSIL FLSNGQDYGM PGEDGGGGAE PPPEMAHCNG IFMSYNFGSR EREYPHVKNV TAQSWAFKST AMIVNAGREE
101: LKGWQMFIGF RHKELIVSAT GATPMDGDYP LDASNGTTFV GSPNMDLKTS IETAGDFTQI SANIEITGTL FGVSKAVTPM PRTIKLTNDG WECPAAKRKG
201: GSMHVCCKRN PKIKNKIGLK TKFAPRRYGD LNIVYDVLQS FDSNYLAQVT IDNDNPLGRL DRWNLTFEWM RGEFINTMRG AYTHKKDPSE CLYSKAGQYY
301: KDLDFSQVMN CQRKPAISDL PPEKKEDNMT GKLPFCCKNG TLLPPIMDPS KSRSMFQLQV FKLPPDLNRT ALYPPQHWKI DGVLNPQYKC GPPVRVDPSQ
401: FPDPSGLLAV TYAISSWQVV CNITKPKAQA SRCCVSFSAF YNNSAVPCNT CACGCNDIDT DTCNANSNPL LLPPDALLVP FDNRTLKAKA WAKQNHMPVP
501: KKLPCPDNCG VSINWHVSTD YKNGWTARLT VFNWRDFAFE DWFVAIDMGK AGPGYENVYS FNGTRVPPSN RTVIFQGLPG MNYLVGQVNG TNPLRDPPVP
601: GKQQSVISFT KKNIKGLNIP EGDGFPTKLF FNGEECALPK HFPKKSSGHR RGISVSMSFV FATIAAFALM MD

Arabidopsis Description

COBL10COBRA-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJU0]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.