Factsheet for VIT_10s0116g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0177g00160.t01	Wine grape	plasma membrane	67.89	67.79
GSMUA_Achr3P21560_001	Banana	plasma membrane	62.39	62.2
GSMUA_Achr4P33540_001	Banana	vacuole	62.84	61.8
CDY36030	Canola	vacuole	60.55	61.11
CDY19626	Canola	mitochondrion	38.23	60.68
PGSC0003DMT400002678	Potato	vacuole	60.86	60.21
Bra035768.1-P	Field mustard	mitochondrion, peroxisome, plastid	34.71	59.74
CDX82237	Canola	endoplasmic reticulum, vacuole	60.4	59.13
Bra001795.1-P	Field mustard	endoplasmic reticulum, vacuole	60.24	58.98
AT3G20580.1	Thale cress	endoplasmic reticulum, vacuole	60.4	58.78
Solyc07g064200.2.1	Tomato	extracellular, golgi, vacuole	54.74	58.21
PGSC0003DMT400002688	Potato	cytosol	11.47	58.14
PGSC0003DMT400037398	Potato	vacuole	58.87	58.07
Bra023941.1-P	Field mustard	plasma membrane	59.63	58.04
Solyc10g006450.2.1	Tomato	golgi, plasma membrane, vacuole	58.87	57.38
AT4G27110.1	Thale cress	extracellular	57.03	55.84
HORVU7Hr1G028350.1	Barley	golgi, mitochondrion, plasma membrane	57.19	55.65
CDX97377	Canola	endoplasmic reticulum, golgi, vacuole	56.42	55.49
TraesCS7A01G136600.1	Wheat	mitochondrion	57.03	55.34
VIT_05s0077g01470.t01	Wine grape	plasma membrane	54.89	55.15
TraesCS7D01G136500.1	Wheat	mitochondrion	56.73	55.04
CDX89278	Canola	extracellular, golgi, vacuole	55.66	54.9
CDY29275	Canola	extracellular, plasma membrane, vacuole	55.81	54.89
Bra026378.1-P	Field mustard	extracellular, golgi, vacuole	54.74	54.82
Bra010411.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	55.35	54.6
TraesCS7B01G037700.1	Wheat	mitochondrion	56.12	54.45
CDY14283	Canola	endoplasmic reticulum, plasma membrane, vacuole	56.57	54.17
KXG36369	Sorghum	mitochondrion	55.5	53.94
Zm00001d021661_P001	Maize	mitochondrion	55.2	53.24
KRH27088	Soybean	mitochondrion	54.59	53.2
Os06t0685100-00	Rice	plasma membrane	55.5	53.15
KRH22248	Soybean	golgi, vacuole	53.98	53.0
CDY09102	Canola	cytosol	20.8	52.11
CDY57659	Canola	cytosol	12.08	51.63
VIT_07s0005g01020.t01	Wine grape	plasma membrane	50.76	51.31
Bra020151.1-P	Field mustard	cytosol	19.88	50.19
CDY55591	Canola	plasma membrane	59.79	47.0
CDY43072	Canola	plasma membrane	59.48	46.04
VIT_14s0083g01150.t01	Wine grape	plasma membrane	18.35	27.84
VIT_17s0000g05050.t01	Wine grape	cytosol	2.45	26.67
VIT_14s0083g01160.t01	Wine grape	vacuole	17.58	26.38
VIT_03s0038g01420.t01	Wine grape	extracellular, plasma membrane	9.79	25.6
VIT_12s0035g00630.t01	Wine grape	extracellular, plasma membrane	16.82	25.52
VIT_17s0000g05070.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	17.74	25.44
VIT_03s0038g01430.t01	Wine grape	mitochondrion	5.81	23.03
VIT_17s0000g05060.t01	Wine grape	plasma membrane	17.89	12.57

Protein Annotations

EntrezGene:100267591	wikigene:100267591	MapMan:21.1.2.2	ProteinID:CBI23180	ProteinID:CBI23180.3	InterPro:COBRA_pln
UniProt:E0CVL9	EMBL:FN595248	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	EntrezGene:LOC100267591
wikigene:LOC100267591	PFAM:PD140986	PFAM:PF04833	PANTHER:PTHR31052	PANTHER:PTHR31052:SF11	SignalP:SignalP-noTM
UniParc:UPI00015CCC4B	ArrayExpress:VIT_10s0116g00620	EnsemblPlantsGene:VIT_10s0116g00620	EnsemblPlants:VIT_10s0116g00620.t01	RefSeq:XP_002264920	RefSeq:XP_002264920.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:265196..267250

Molecular Weight (calculated)

73149.9 Da

IEP (calculated)

7.656

GRAVY (calculated)

-0.228

Length

654 amino acids

Sequence
(BLAST)

001: MVWRLLVYMF FISFTSDQFI RAQDYTDYVP PAPPPEEENC DGIFVSYTFI SRQKEFPHVK NASAQAWAFK AMATVLNAGT FELKAWKIFI GFQHDEILVS
101: AGGAVVMNGD DMPAAVGNGT YLSGFPQTDL KTSIETAGDL TQIEVQIPIT GTQFGVKPPG VPMPRTISLA NDGYKCPKPT VKKTAMHVCC TRKPKFKVKT
201: ESTKFLPRQY GDLSFVYDII QAYDGNYLAQ VTIENNHPLG RLDHWNLTWE WMRGEFINTM RGAYTHKIDS TDCIYGAAGQ YYKGLDFSQV MNCEKNPIIG
301: DLPSEKAKDD KVGFIPHCCR NGSLLPTIMD QTKSKAAFQL QVYKIPPDMN RTVLFPPQKW KIVGVLNPDY KCGPPIRVDP TEFPDASGLL QVTSSAIASW
401: QVTCNITRPK KRNSRCCVSY SAYYNDSVIP CNTCACGCDD TETCNPNIPS MLLPSEALLV PFENRTAKAK AWAKLKHLNV PSPLPCGDNC GVSINWHINS
501: DYKTGWTARI TLFNWEEIIF EDWFVAVEMK KAFLGYENIY SFNGTVLKDI NNTLFFQGLP GLNYLMGEVN GSDPKSDPKV PGKQQSVISF KKKLTPGIKI
601: VQGDGFPSKL YFNGEECSLP TEFPIGDGNR YRVNLVPVIL LTLVTSMLMT NHLH

Best Arabidopsis Sequence Match ( AT3G20580.1 )
(BLAST)

001: MRAIDVKTGM KIPWDVRYSL SLFIFLSSIL FLSNGQDYGM PGEDGGGGAE PPPEMAHCNG IFMSYNFGSR EREYPHVKNV TAQSWAFKST AMIVNAGREE
101: LKGWQMFIGF RHKELIVSAT GATPMDGDYP LDASNGTTFV GSPNMDLKTS IETAGDFTQI SANIEITGTL FGVSKAVTPM PRTIKLTNDG WECPAAKRKG
201: GSMHVCCKRN PKIKNKIGLK TKFAPRRYGD LNIVYDVLQS FDSNYLAQVT IDNDNPLGRL DRWNLTFEWM RGEFINTMRG AYTHKKDPSE CLYSKAGQYY
301: KDLDFSQVMN CQRKPAISDL PPEKKEDNMT GKLPFCCKNG TLLPPIMDPS KSRSMFQLQV FKLPPDLNRT ALYPPQHWKI DGVLNPQYKC GPPVRVDPSQ
401: FPDPSGLLAV TYAISSWQVV CNITKPKAQA SRCCVSFSAF YNNSAVPCNT CACGCNDIDT DTCNANSNPL LLPPDALLVP FDNRTLKAKA WAKQNHMPVP
501: KKLPCPDNCG VSINWHVSTD YKNGWTARLT VFNWRDFAFE DWFVAIDMGK AGPGYENVYS FNGTRVPPSN RTVIFQGLPG MNYLVGQVNG TNPLRDPPVP
601: GKQQSVISFT KKNIKGLNIP EGDGFPTKLF FNGEECALPK HFPKKSSGHR RGISVSMSFV FATIAAFALM MD

Arabidopsis Description

COBL10COBRA-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJU0]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.