Factsheet for VIT_07s0005g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 8
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0077g01470.t01	Wine grape	plasma membrane	64.92	64.52
Solyc09g075540.1.1	Tomato	plasma membrane	62.44	61.96
AT4G16120.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	60.74	59.46
CDY34424	Canola	plasma membrane	59.97	58.88
Bra033528.1-P	Field mustard	plasma membrane	59.81	58.73
CDY32210	Canola	plasma membrane	59.81	58.64
AT3G16860.1	Thale cress	plasma membrane	57.81	57.27
CDY52722	Canola	endoplasmic reticulum, plasma membrane, vacuole	56.72	55.19
Bra021208.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	56.41	54.72
CDY34980	Canola	endoplasmic reticulum, plasma membrane, vacuole	56.41	54.72
VIT_19s0177g00160.t01	Wine grape	plasma membrane	52.09	51.45
VIT_10s0116g00620.t01	Wine grape	extracellular	51.31	50.76
GSMUA_AchrUn_...	Banana	plasma membrane	52.09	50.52
GSMUA_Achr11P...	Banana	plasma membrane	51.93	49.7
Zm00001d028826_P001	Maize	plasma membrane	50.08	48.58
TraesCS4B01G187300.1	Wheat	golgi	50.08	48.58
TraesCS4D01G188600.1	Wheat	golgi	50.08	48.14
Os03t0301200-01	Rice	extracellular, plasma membrane, vacuole	49.46	47.69
TraesCS4A01G117100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	49.46	47.55
EER95000	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	49.0	47.31
GSMUA_Achr8P10390_001	Banana	cytosol	17.93	46.4
Zm00001d007208_P001	Maize	extracellular, plasma membrane, vacuole	46.06	45.57
HORVU0Hr1G030030.1	Barley	extracellular, plasma membrane	46.06	45.08
TraesCS2D01G092100.1	Wheat	plasma membrane	45.9	45.0
OQU90545	Sorghum	extracellular, plasma membrane, vacuole	45.75	44.78
TraesCS2B01G107700.1	Wheat	plasma membrane	45.6	44.76
HORVU2Hr1G015440.1	Barley	cytosol	36.48	42.83
TraesCS2A01G092900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	45.6	42.63
Os07t0690900-01	Rice	plasma membrane	44.2	42.37
HORVU4Hr1G054770.1	Barley	plastid	49.3	40.38
VIT_14s0083g01150.t01	Wine grape	plasma membrane	19.47	29.23
VIT_12s0035g00630.t01	Wine grape	extracellular, plasma membrane	18.08	27.15
VIT_14s0083g01160.t01	Wine grape	vacuole	18.24	27.06
VIT_17s0000g05070.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	19.01	26.97
VIT_17s0000g05050.t01	Wine grape	cytosol	2.47	26.67
VIT_03s0038g01420.t01	Wine grape	extracellular, plasma membrane	9.58	24.8
VIT_03s0038g01430.t01	Wine grape	mitochondrion	5.87	23.03
VIT_17s0000g05060.t01	Wine grape	plasma membrane	19.47	13.53

Protein Annotations

EntrezGene:100255470	wikigene:100255470	MapMan:21.1.2.2	ProteinID:CBI36912	ProteinID:CBI36912.3	InterPro:COBRA_pln
UniProt:D7U2E6	EMBL:FN596502	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007
EntrezGene:LOC100255470	wikigene:LOC100255470	PFAM:PD140986	PFAM:PF04833	PANTHER:PTHR31052	PANTHER:PTHR31052:SF3
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI00019838C2	ArrayExpress:VIT_07s0005g01020	EnsemblPlantsGene:VIT_07s0005g01020	EnsemblPlants:VIT_07s0005g01020.t01
RefSeq:XP_002269413	RefSeq:XP_002269413.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:3584986..3587192

Molecular Weight (calculated)

71887.6 Da

IEP (calculated)

6.263

GRAVY (calculated)

-0.179

Length

647 amino acids

Sequence
(BLAST)

001: MARLLFFFIV IIIFFFISLP LSLSQSTAEE SCNGIFLSYN YTSGHRLPPT LIPSDPSQQP YRFESNLAIL NNGLRELKSW RVYVGFEHGE VLVSASHAVL
101: DDGSLLPANV GNGTVFSGFP ERDLKTAVET AGYLPRMRAQ VQLVGTQFGV TDPDVPLPST ITLANDGFSC PNPTKLNFWM HVCCTEDSRS NFTTGEDLQP
201: LQNGDVTIMY DVIRSYETNY RAQVTISNHN PLDRLDNWKL SWEWKRDEFI YAMKGAYPSV VDSTDCIFGK PGESYKDMDF SNALNCERRP TIIDLPPTMV
301: NNSDLGMIPF CCRNGTILPP TMDQSKSVSV FQMQVFKMPT EFNRTQLIPP QNWKIRGEVN QDYQCAPPVR VSQSQFPNPS GLPSESTAIA TWQVACNKTE
401: SKGAIPRCCV SFSAFFNDSV VPCNTCACGC KSSPSNTCSA SAQALLLPSE ALLVPFENRT RKTTEFAELQ RRALPNPLPC GDNCGVSINW HLFTDYDNGW
501: TARITLFNWG ETDFVDWFAA LQFDKAVPGF QTMYSFNGSA LPGVPANNTI FMQGKPGLNY LLAEKDGKKP KKDPRVPGAQ QSVLSFTKKT TPGIKVARGD
601: GFPTKVFFNG EECSLPSILP SNAYRMIVAT RFFSFLLAAV ALLFLQQ

Best Arabidopsis Sequence Match ( AT4G16120.1 )
(BLAST)

001: MDSAPNFIPR LLLLSLLIVS IPLTSSQSDA NTTNPSPSPP SDSDLCNGVF VSYTHTKGSK IPPNDTANQP YRFESVITVL NHGRDELKSW RVFVKFAHRE
101: ILVSASNAVL SDGSSLPVSV ENGTVFAGYP SSDLKSAIQT AGDVTQMQAR VELVGTQFGV APPNVPLPKN ITLATDGWKC PKATQKGTNV LQVCCIPDPD
201: YDNREIIDNE FLPRKDGDLT IMYDVVRSYS SNYMAQVTME NHNPLGRLDN WKLSFDWMRD EFIYTMKGAY PSIVDSSDCV DGPQAKHYQD LDFSNVLSCA
301: RRPTVIDLPP TKYNDSTFGL IPFCCRNGTI LPRSMDPSKS SSVFQMQVYK MPPDLNISAL SPPQNWRING TLNPDYKCGP PVRVSPSQFV DPSGLPSNRT
401: AFASWQVVCN ITQPKDASPR CCVSFSAYFN DSIVPCKTCA CGCSSNKAAR ACSATAPSLL LPQQALLVPF ENRTELTVAW AYLKQRPVPN PMPCGDNCGV
501: SINWHLATDY RGGWTARVTV FNWGETDFVD WFTAVQMKNA APGFEKAYSF NASTIGINGK NNTIFMEGLP GLNYLVAERD GENPLKNPRI PGKQQSVMSF
601: TKKLTPGINV PGGDGFPSKV FFNGEECSLP TILPMRSSQH RKHISVFLLA LPVLALLILR A

Arabidopsis Description

COBL7COBRA-like protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ17]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.