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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 7
  • golgi 6
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:golgi
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d028826_P001 Maize plasma membrane 94.03 94.45
Os03t0301200-01 Rice extracellular, plasma membrane, vacuole 88.06 87.93
TraesCS4B01G187300.1 Wheat golgi 84.18 84.56
TraesCS4D01G188600.1 Wheat golgi 84.93 84.55
TraesCS4A01G117100.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 84.93 84.55
HORVU4Hr1G054770.1 Barley plastid 84.63 71.77
OQU90545 Sorghum extracellular, plasma membrane, vacuole 64.33 65.2
GSMUA_Achr11P... Banana plasma membrane 58.66 58.14
GSMUA_AchrUn_... Banana plasma membrane 57.61 57.87
PGSC0003DMT400065836 Potato cytosol 39.7 56.72
KRH50776 Soybean endoplasmic reticulum, vacuole 52.99 55.21
KRH02312 Soybean endoplasmic reticulum, extracellular 52.99 55.12
VIT_05s0077g01470.t01 Wine grape plasma membrane 52.24 53.76
Bra033528.1-P Field mustard plasma membrane 51.94 52.81
CDY32210 Canola plasma membrane 51.79 52.58
CDY34424 Canola plasma membrane 51.64 52.5
PGSC0003DMT400065840 Potato endoplasmic reticulum, extracellular, plasma membrane 50.0 51.46
AT4G16120.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 50.6 51.29
Solyc01g065530.2.1 Tomato nucleus, plastid 49.55 51.23
KRH37033 Soybean extracellular 48.81 50.31
AT3G16860.1 Thale cress plasma membrane 48.36 49.62
CDY52722 Canola endoplasmic reticulum, plasma membrane, vacuole 48.66 49.02
VIT_07s0005g01020.t01 Wine grape plasma membrane 47.31 49.0
CDY34980 Canola endoplasmic reticulum, plasma membrane, vacuole 48.66 48.88
Bra021208.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 48.51 48.73
CDY49611 Canola plasma membrane 47.76 48.34
Bra036147.1-P Field mustard plasma membrane 47.76 48.34
CDY00037 Canola plasma membrane 47.61 48.19
Solyc09g075540.1.1 Tomato plasma membrane 46.87 48.16
AT5G49270.1 Thale cress extracellular, plasma membrane, vacuole 47.46 47.96
KXG36369 Sorghum mitochondrion 46.72 46.51
GSMUA_Achr8P10390_001 Banana cytosol 17.31 46.4
EER90859 Sorghum extracellular 18.66 29.41
EER90860 Sorghum extracellular, golgi, plasma membrane 19.4 28.95
EER99679 Sorghum plasma membrane 19.25 28.92
EER94687 Sorghum extracellular 18.96 28.48
EER97506 Sorghum extracellular, plasma membrane 18.96 27.73
OQU92393 Sorghum extracellular 17.31 25.16
KXG26803 Sorghum extracellular, plasma membrane 16.12 24.16
Protein Annotations
MapMan:21.1.2.2EntrezGene:8081101UniProt:C5WML2InterPro:COBRA_plnEnsemblPlants:EER95000ProteinID:EER95000
ProteinID:EER95000.1GO:GO:0005575GO:GO:0008150GO:GO:0009987GO:GO:0010215GO:GO:0016020
GO:GO:0016021GO:GO:0016043GO:GO:0016049GO:GO:0031225GO:GO:0040007PFAM:PD140986
PFAM:PF04833PANTHER:PTHR31052PANTHER:PTHR31052:SF10EnsemblPlantsGene:SORBI_3001G399900SignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI0001A82F60RefSeq:XP_002468002.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr1:-:68528272..68530616
Molecular Weight (calculated)
71909.7 Da
IEP (calculated)
6.619
GRAVY (calculated)
-0.071
Length
670 amino acids
Sequence
(BLAST)
001: MAGSVAPHAV VLALLLLAGL AAAQRGTTPT PTPAAAAPAP DPGCNGIEVT YNFGGRTKIR PYVSDKNKQP YAFRANVTVR NSGTRPLKSW AALVTFGYDE
101: ILVGVDGAVL TGGGELPYNT TEDAGNATSF SGYPQTDLLT PIATAGDLSQ IQASVGIVGT LFAGPGFDPL PTALSLDDPA YACPAATNLT SKVLSTCCVL
201: TPEAEANATV IDANATDPTK NFLPRGTGDL VITYDVLQAY PSSYLALVTL ENNAKLGRLD NWRMSWEWRR GEFIYSMKGA HPSEVDTSGC IYGAPGQYYQ
301: SLDFSQVLNC DRKPVILDLP LSRYNDTQIG KIDNCCRNGT ILPKSMDEAQ SKSAFQMQVF KMPPDLNRTK LFPPANFKIA GASSLNPDYT CGQPVPVSPT
401: AFPDPSGLDS TTLAVATWQV VCNITTTKGA KPKCCVTFSA YYNDSVIPCN TCACGCPANR RGPTCSTTAQ SMLLPPEALL MPFNNRSHKA LAWAELKHYN
501: VPRPMPCGDF CGVSINWHVS TDYNKGWSAR VTLFNWEDVD MANWFAAIVM DKAYDGFEKA YSFNATSVGK NTIFMQGLEG LNYLVKQTNM SGIDYLVPGK
601: QQSVLSFTKK LTPGINVVAG DGFPTKVFFN GDECAMPQRI PMSNGFGNRL SSGLALVLFL AASAFLLLQQ
Best Arabidopsis Sequence Match ( AT4G16120.1 )
(BLAST)
001: MDSAPNFIPR LLLLSLLIVS IPLTSSQSDA NTTNPSPSPP SDSDLCNGVF VSYTHTKGSK IPPNDTANQP YRFESVITVL NHGRDELKSW RVFVKFAHRE
101: ILVSASNAVL SDGSSLPVSV ENGTVFAGYP SSDLKSAIQT AGDVTQMQAR VELVGTQFGV APPNVPLPKN ITLATDGWKC PKATQKGTNV LQVCCIPDPD
201: YDNREIIDNE FLPRKDGDLT IMYDVVRSYS SNYMAQVTME NHNPLGRLDN WKLSFDWMRD EFIYTMKGAY PSIVDSSDCV DGPQAKHYQD LDFSNVLSCA
301: RRPTVIDLPP TKYNDSTFGL IPFCCRNGTI LPRSMDPSKS SSVFQMQVYK MPPDLNISAL SPPQNWRING TLNPDYKCGP PVRVSPSQFV DPSGLPSNRT
401: AFASWQVVCN ITQPKDASPR CCVSFSAYFN DSIVPCKTCA CGCSSNKAAR ACSATAPSLL LPQQALLVPF ENRTELTVAW AYLKQRPVPN PMPCGDNCGV
501: SINWHLATDY RGGWTARVTV FNWGETDFVD WFTAVQMKNA APGFEKAYSF NASTIGINGK NNTIFMEGLP GLNYLVAERD GENPLKNPRI PGKQQSVMSF
601: TKKLTPGINV PGGDGFPSKV FFNGEECSLP TILPMRSSQH RKHISVFLLA LPVLALLILR A
Arabidopsis Description
COBL7COBRA-like protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ17]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.