Factsheet for Solyc01g065530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065836	Potato	cytosol	71.45	98.72
PGSC0003DMT400065840	Potato	endoplasmic reticulum, extracellular, plasma membrane	97.22	96.77
VIT_05s0077g01470.t01	Wine grape	plasma membrane	68.83	68.51
KRH02312	Soybean	endoplasmic reticulum, extracellular	65.28	65.68
KRH50776	Soybean	endoplasmic reticulum, vacuole	64.35	64.85
CDY34424	Canola	plasma membrane	62.81	61.76
CDY32210	Canola	plasma membrane	62.35	61.21
Bra033528.1-P	Field mustard	plasma membrane	62.19	61.15
AT4G16120.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	61.88	60.67
AT3G16860.1	Thale cress	plasma membrane	60.8	60.34
Solyc09g075540.1.1	Tomato	plasma membrane	58.33	57.98
CDY52722	Canola	endoplasmic reticulum, plasma membrane, vacuole	58.95	57.44
CDY34980	Canola	endoplasmic reticulum, plasma membrane, vacuole	58.02	56.37
Bra021208.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	57.72	56.07
GSMUA_AchrUn_...	Banana	plasma membrane	52.16	50.67
Zm00001d028826_P001	Maize	plasma membrane	52.01	50.52
GSMUA_Achr11P...	Banana	plasma membrane	52.47	50.3
Os03t0301200-01	Rice	extracellular, plasma membrane, vacuole	51.39	49.63
Solyc07g064200.2.1	Tomato	extracellular, golgi, vacuole	47.07	49.59
EER95000	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	51.23	49.55
Solyc10g006450.2.1	Tomato	golgi, plasma membrane, vacuole	50.93	49.18
Solyc02g080240.1.1	Tomato	extracellular	28.86	48.57
TraesCS4D01G188600.1	Wheat	golgi	49.85	47.99
TraesCS4B01G187300.1	Wheat	golgi	49.38	47.98
Solyc02g080250.1.1	Tomato	cytosol	25.15	47.66
GSMUA_Achr8P10390_001	Banana	cytosol	18.36	47.6
TraesCS4A01G117100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	49.38	47.55
Zm00001d007208_P001	Maize	extracellular, plasma membrane, vacuole	47.38	46.94
OQU90545	Sorghum	extracellular, plasma membrane, vacuole	46.91	45.99
HORVU0Hr1G030030.1	Barley	extracellular, plasma membrane	46.14	45.23
TraesCS2B01G107700.1	Wheat	plasma membrane	45.83	45.07
TraesCS2D01G092100.1	Wheat	plasma membrane	45.83	45.0
HORVU2Hr1G015440.1	Barley	cytosol	37.04	43.56
Os07t0690900-01	Rice	plasma membrane	45.37	43.56
TraesCS2A01G092900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	45.52	42.63
HORVU4Hr1G054770.1	Barley	plastid	50.15	41.14
Solyc02g064790.1.1	Tomato	extracellular, vacuole	3.55	33.33
Solyc02g089130.2.1	Tomato	extracellular	19.6	29.26
Solyc03g070440.2.1	Tomato	extracellular	19.29	29.0
Solyc03g114890.2.1	Tomato	extracellular	17.9	28.93
Solyc02g065770.2.1	Tomato	extracellular	19.6	28.6
Solyc03g114910.2.1	Tomato	extracellular, plasma membrane, vacuole	20.22	28.6
Solyc02g089120.2.1	Tomato	extracellular	19.44	28.19
Solyc01g103860.2.1	Tomato	cytosol	18.36	28.13
Solyc03g114900.2.1	Tomato	extracellular	18.83	27.29
Solyc03g070460.1.1	Tomato	cytosol	4.78	26.72
Solyc03g114880.1.1	Tomato	cytosol, extracellular, vacuole	12.19	24.76
Solyc01g111050.2.1	Tomato	cytosol	17.44	24.09
Solyc03g070450.1.1	Tomato	extracellular, vacuole	6.33	19.07

Protein Annotations

EnsemblPlants:Solyc01g065530.2.1	EnsemblPlantsGene:Solyc01g065530.2	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007
InterPro:COBRA_pln	PANTHER:PTHR31052	PANTHER:PTHR31052:SF3	PFAM:PD140986	PFAM:PF04833	SEG:seg
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002762535	UniProt:K4AWF7	MapMan:21.1.2.2	:

Description

No Description!

Coordinates

chr1:+:71809220..71812338

Molecular Weight (calculated)

70790.7 Da

IEP (calculated)

5.841

GRAVY (calculated)

-0.059

Length

648 amino acids

Sequence
(BLAST)

001: MALTTTFFSL FLLIITVAGQ TTPMAEAPAP AADDCNGIFL QYVFNSGSKI KPTLKTRQPY KFQSILSITN NGLEELKLWR VFVGFQHDEI LVSASNALLA
101: DGESFPALVG NGTVFAGFPA ADLKTAVETA GDTTQTSVQI KIVGTQFGVG SPNVPMPSNI SLENDGFICP KPSMQGKSVM QVCCIKDENF KTNLTLGEKF
201: SPRQDGDLTI MYDILRTYDS NYWAQVTIAN HNPLGRLDNW KLSWDWMKDE FIWEMKGAYP SVVDTSECVF GPQAKFYQNL DFSTGLNCQR RPTLIDLPLE
301: KTNDTKLGMI PFCCRNGTIL PPAMDPSKSV SAFQMNVFKM PPDLNRSSFT PPQNWKIEGR LNPDYKCGPP VRVSPTQVPD PSGLLPATSV FASWQVVCNI
401: TQPKGASPRC CVSFSAFYNE SIIPCPTCAC GCPSNTARTC STKAPALLLP SQALLVPFDN RTKMSLAWAE INHLPVSNPL PCGDNCGVSI NWHLFTDYRG
501: GWSARITIFN WEDAAFADWF TAVELDKAAA GFDAVYSFNG TMLDGVNNTI FMQGLPGLNY IVAEADGANP AKDPRVPGKQ QSVISFTKKN IPNINVAAGD
601: GFPTKLYFNG EECSLPKLLP TSSSSRISSF TVTTSILAAV VVFMLVRQ

Best Arabidopsis Sequence Match ( AT4G16120.1 )
(BLAST)

001: MDSAPNFIPR LLLLSLLIVS IPLTSSQSDA NTTNPSPSPP SDSDLCNGVF VSYTHTKGSK IPPNDTANQP YRFESVITVL NHGRDELKSW RVFVKFAHRE
101: ILVSASNAVL SDGSSLPVSV ENGTVFAGYP SSDLKSAIQT AGDVTQMQAR VELVGTQFGV APPNVPLPKN ITLATDGWKC PKATQKGTNV LQVCCIPDPD
201: YDNREIIDNE FLPRKDGDLT IMYDVVRSYS SNYMAQVTME NHNPLGRLDN WKLSFDWMRD EFIYTMKGAY PSIVDSSDCV DGPQAKHYQD LDFSNVLSCA
301: RRPTVIDLPP TKYNDSTFGL IPFCCRNGTI LPRSMDPSKS SSVFQMQVYK MPPDLNISAL SPPQNWRING TLNPDYKCGP PVRVSPSQFV DPSGLPSNRT
401: AFASWQVVCN ITQPKDASPR CCVSFSAYFN DSIVPCKTCA CGCSSNKAAR ACSATAPSLL LPQQALLVPF ENRTELTVAW AYLKQRPVPN PMPCGDNCGV
501: SINWHLATDY RGGWTARVTV FNWGETDFVD WFTAVQMKNA APGFEKAYSF NASTIGINGK NNTIFMEGLP GLNYLVAERD GENPLKNPRI PGKQQSVMSF
601: TKKLTPGINV PGGDGFPSKV FFNGEECSLP TILPMRSSQH RKHISVFLLA LPVLALLILR A

Arabidopsis Description

COBL7COBRA-like protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ17]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.