Factsheet for Solyc03g070460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035948.1-P	Field mustard	cytosol	31.9	38.14
Solyc02g089120.2.1	Tomato	extracellular	62.93	16.33
Solyc02g065770.2.1	Tomato	extracellular	61.21	15.99
Solyc02g089130.2.1	Tomato	extracellular	57.76	15.44
Solyc03g070440.2.1	Tomato	extracellular	56.03	15.08
Solyc03g114890.2.1	Tomato	extracellular	49.14	14.21
Solyc03g114900.2.1	Tomato	extracellular	54.31	14.09
Solyc03g114910.2.1	Tomato	extracellular, plasma membrane, vacuole	51.72	13.1
Solyc01g103860.2.1	Tomato	cytosol	41.38	11.35
Solyc01g111050.2.1	Tomato	cytosol	40.52	10.02
Solyc03g114880.1.1	Tomato	cytosol, extracellular, vacuole	25.0	9.09
Solyc02g080240.1.1	Tomato	extracellular	26.72	8.05
Solyc09g075540.1.1	Tomato	plasma membrane	28.45	5.06
Solyc01g065530.2.1	Tomato	nucleus, plastid	26.72	4.78
Solyc10g006450.2.1	Tomato	golgi, plasma membrane, vacuole	25.86	4.47
Solyc07g064200.2.1	Tomato	extracellular, golgi, vacuole	22.41	4.23
Solyc02g064790.1.1	Tomato	extracellular, vacuole	1.72	2.9
Solyc02g080250.1.1	Tomato	cytosol	6.9	2.34
Solyc03g070450.1.1	Tomato	extracellular, vacuole	0.86	0.47

Protein Annotations

EnsemblPlants:Solyc03g070460.1.1	EnsemblPlantsGene:Solyc03g070460.1	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31673	PANTHER:PTHR31673:SF3	PFAM:PD140986	PFAM:PF04833	UniParc:UPI0002767A06	UniProt:K4BHH5
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:16344726..16345258

Molecular Weight (calculated)

12572.9 Da

IEP (calculated)

8.092

GRAVY (calculated)

-0.429

Length

116 amino acids

Sequence
(BLAST)

001: MKTGRMSAGH QMDMSHIQPP GWSLKWTWAK DEMIRSMLGS QTTEQGSTVI DVLHEAPHNQ QTANCCKGGV VNSWGQDPAN SIISFQLTVG SAGTTNNTIR
101: IPKNFTLNAP GPGYIC

Best Arabidopsis Sequence Match ( AT3G02210.1 )
(BLAST)

001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL

Arabidopsis Description

COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.