Factsheet for Solyc03g070450.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 1
golgi 3
plastid 2
extracellular 3
plasma membrane 3
endoplasmic reticulum 2
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g064790.1.1	Tomato	extracellular, vacuole	10.7	33.33
Solyc02g089120.2.1	Tomato	extracellular	43.26	20.81
Solyc02g065770.2.1	Tomato	extracellular	40.93	19.82
Solyc03g114910.2.1	Tomato	extracellular, plasma membrane, vacuole	36.28	17.03
Solyc03g114890.2.1	Tomato	extracellular	29.77	15.96
Solyc03g070440.2.1	Tomato	extracellular	31.63	15.78
Solyc02g089130.2.1	Tomato	extracellular	31.16	15.44
Solyc03g114900.2.1	Tomato	extracellular	31.16	14.99
Solyc01g103860.2.1	Tomato	cytosol	28.84	14.66
Solyc01g111050.2.1	Tomato	cytosol	29.77	13.65
Solyc03g114880.1.1	Tomato	cytosol, extracellular, vacuole	19.07	12.85
Solyc02g080250.1.1	Tomato	cytosol	16.74	10.53
Solyc01g065530.2.1	Tomato	nucleus, plastid	19.07	6.33
Solyc10g006450.2.1	Tomato	golgi, plasma membrane, vacuole	18.6	5.96
Solyc09g075540.1.1	Tomato	plasma membrane	17.67	5.83
Solyc07g064200.2.1	Tomato	extracellular, golgi, vacuole	14.88	5.2
Solyc03g070460.1.1	Tomato	cytosol	0.47	0.86
Solyc02g080240.1.1	Tomato	extracellular	0.93	0.52
Bra035948.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc03g070450.1.1	EnsemblPlantsGene:Solyc03g070450.1	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007
InterPro:COBRA_pln	PANTHER:PTHR31673	PANTHER:PTHR31673:SF3	TMHMM:TMhelix	UniParc:UPI0002767A05	UniProt:K4BHH4
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:16343345..16344582

Molecular Weight (calculated)

24678.8 Da

IEP (calculated)

7.765

GRAVY (calculated)

0.008

Length

215 amino acids

Sequence
(BLAST)

001: MTVTWNVTCI YLQFMGHNNP TCCVSILSLY NDTIVPCSCG CKNSGTKPGS CVDYVLVYFF WAHLNCWNSF VIYYRCTSPF FYCRSEKPHL ASIVSDHGKN
101: NFTPLVQCTD RMCPVGIYRH VKLNYKDNWR FELLLQKDAS NLTLDKGWAF PRRVYFDGDN CVMPPSEAYP HLSNDIPAMP PPDTDPHILN AASQWKVSLL
201: KLVVTLMFSM AFFFC

Best Arabidopsis Sequence Match ( AT3G29810.1 )
(BLAST)

001: MNILFSRFSF LLLFLCSWTS FTFTTTEAYD ALDPYGNITI KWDIMSWTGD GYVAVVTIFN FQQYRHIEAP GWQLGWSWMK KEVIWSMVGG QATEQGDCSK
101: FKGNIPHCCK KTPAIVDLLP GTPYNQQISN CCRGGVISAW AQDPATAISS FQISVGQSGT TNTTVRAPRN ITLKAPGPGY TCGPAKLVKP SRFISADKRR
201: KTQSLLTWNI TCTYSQFLAR KTPTCCVSLS AFYNETIVPC PTCSCGCQNS SQAGTCVDPK IASVVPALGK NNLEPLLQCT QHMCPIRVHW HVKTSYKEYW
301: RVKVAITNFN YNMNYSQWNL VVQHPNFDNL TKLFSFNYKP LNPYLNINDT AMLWGIKFYN DFLSQAGPVG NVQSELLFQK NPLEFTFEKG WAFPRRIYFN
401: GDNCVMPPPD SYPWLPNASP NIATSPFVIL LITFLSVLIL M

Arabidopsis Description

COBL3COBRA-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8Q7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.