Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 8
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003470 | Potato | extracellular | 96.87 | 96.87 |
| Solyc02g065770.2.1 | Tomato | extracellular | 86.58 | 87.16 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 81.21 | 79.61 |
| GSMUA_Achr4P01440_001 | Banana | extracellular, plasma membrane | 78.75 | 77.02 |
| KRH63181 | Soybean | endoplasmic reticulum | 77.85 | 76.32 |
| GSMUA_Achr1P24500_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 78.08 | 76.2 |
| KRH03165 | Soybean | extracellular | 77.18 | 75.99 |
| KRH54735 | Soybean | endoplasmic reticulum | 77.4 | 75.88 |
| AT5G60920.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 76.96 | 75.44 |
| Zm00001d031479_P001 | Maize | cytosol, mitochondrion | 27.29 | 74.39 |
| EER97506 | Sorghum | extracellular, plasma membrane | 75.39 | 73.58 |
| CDY02184 | Canola | plasma membrane | 74.94 | 73.3 |
| CDY58691 | Canola | plasma membrane | 74.94 | 73.14 |
| Bra012996.1-P | Field mustard | plasma membrane | 74.72 | 73.09 |
| Os05t0386800-01 | Rice | extracellular | 74.72 | 73.09 |
| CDX87193 | Canola | plasma membrane | 74.5 | 73.03 |
| CDY16831 | Canola | plasma membrane | 74.72 | 72.93 |
| Os07t0604300-01 | Rice | extracellular | 72.48 | 72.65 |
| Zm00001d013256_P001 | Maize | extracellular | 72.71 | 72.38 |
| EER90860 | Sorghum | extracellular, golgi, plasma membrane | 72.71 | 72.38 |
| Bra035951.1-P | Field mustard | plasma membrane | 74.05 | 72.27 |
| GSMUA_Achr2P06240_001 | Banana | mitochondrion | 75.84 | 71.07 |
| Os03t0754500-00 | Rice | extracellular | 33.78 | 70.56 |
| Zm00001d034049_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 71.14 | 70.35 |
| Zm00001d022081_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 72.26 | 70.22 |
| TraesCS6D01G364400.1 | Wheat | extracellular | 69.57 | 69.57 |
| EER90859 | Sorghum | extracellular | 65.55 | 68.94 |
| TraesCS5A01G392000.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 70.25 | 68.71 |
| TraesCS5B01G396900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 70.25 | 68.71 |
| TraesCS6B01G418400.1 | Wheat | extracellular | 68.68 | 68.68 |
| TraesCS6A01G379800.1 | Wheat | extracellular | 68.68 | 68.68 |
| TraesCS5D01G401900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 70.02 | 68.49 |
| OQU92393 | Sorghum | extracellular | 70.02 | 67.9 |
| Solyc03g070440.2.1 | Tomato | extracellular | 65.1 | 67.52 |
| Solyc03g114910.2.1 | Tomato | extracellular, plasma membrane, vacuole | 68.9 | 67.25 |
| Solyc02g089130.2.1 | Tomato | extracellular | 65.1 | 67.05 |
| HORVU5Hr1G095910.12 | Barley | extracellular, vacuole | 68.9 | 66.96 |
| Os03t0416300-01 | Rice | extracellular | 68.46 | 66.81 |
| TraesCS2A01G175100.1 | Wheat | extracellular | 67.11 | 66.23 |
| CDY42842 | Canola | cytosol | 17.9 | 65.57 |
| Solyc03g114890.2.1 | Tomato | extracellular | 58.61 | 65.34 |
| Bra029346.1-P | Field mustard | cytosol, plasma membrane, plastid | 17.9 | 65.04 |
| TraesCS2D01G182500.1 | Wheat | golgi | 66.0 | 64.84 |
| TraesCS4A01G231200.1 | Wheat | extracellular | 66.44 | 64.57 |
| TraesCS3A01G409900.1 | Wheat | plastid | 39.82 | 64.26 |
| TraesCS4B01G084800.1 | Wheat | extracellular | 64.88 | 63.74 |
| TraesCS4D01G082700.1 | Wheat | extracellular | 65.55 | 63.56 |
| TraesCS2B01G201500.1 | Wheat | plasma membrane | 65.1 | 63.4 |
| HORVU4Hr1G014530.1 | Barley | extracellular | 65.55 | 63.28 |
| Solyc03g070460.1.1 | Tomato | cytosol | 16.33 | 62.93 |
| Solyc03g114900.2.1 | Tomato | extracellular | 62.64 | 62.64 |
| HORVU2Hr1G033070.14 | Barley | mitochondrion | 65.32 | 62.13 |
| KRH56778 | Soybean | extracellular | 28.64 | 61.24 |
| Os10t0497700-01 | Rice | extracellular | 57.72 | 60.71 |
| TraesCS3B01G443000.1 | Wheat | cytosol, plasma membrane, vacuole | 55.26 | 59.09 |
| HORVU5Hr1G067940.1 | Barley | plasma membrane, plastid | 61.3 | 58.05 |
| TraesCS5D01G402000.1 | Wheat | extracellular | 29.31 | 57.46 |
| TraesCS5B01G397000.2 | Wheat | extracellular | 28.64 | 56.39 |
| TraesCS3D01G404800.2 | Wheat | plasma membrane | 56.6 | 55.36 |
| HORVU5Hr1G096010.13 | Barley | endoplasmic reticulum | 34.23 | 54.84 |
| Solyc01g103860.2.1 | Tomato | cytosol | 50.34 | 53.19 |
| Solyc03g114880.1.1 | Tomato | cytosol, extracellular, vacuole | 37.36 | 52.35 |
| Solyc02g064790.1.1 | Tomato | extracellular, vacuole | 7.38 | 47.83 |
| Solyc03g070450.1.1 | Tomato | extracellular, vacuole | 20.81 | 43.26 |
| Solyc01g111050.2.1 | Tomato | cytosol | 43.62 | 41.58 |
| Solyc02g080250.1.1 | Tomato | cytosol | 18.34 | 23.98 |
| Solyc01g065530.2.1 | Tomato | nucleus, plastid | 28.19 | 19.44 |
| Solyc09g075540.1.1 | Tomato | plasma membrane | 28.19 | 19.33 |
| Solyc10g006450.2.1 | Tomato | golgi, plasma membrane, vacuole | 27.96 | 18.63 |
| Solyc07g064200.2.1 | Tomato | extracellular, golgi, vacuole | 23.71 | 17.24 |
| Solyc02g080240.1.1 | Tomato | extracellular | 12.3 | 14.29 |
Protein Annotations
| EnsemblPlants:Solyc02g089120.2.1 | EnsemblPlantsGene:Solyc02g089120.2 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 | InterPro:COBRA_pln |
| PANTHER:PTHR31673 | PANTHER:PTHR31673:SF3 | PFAM:PD140986 | PFAM:PF04833 | PFscan:PS51257 | PIRSF:PIRSF038122 |
| SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0002768A7B | UniProt:K4BC66 | MapMan:21.1.2.2 | : |
Description
No Description!
Coordinates
chr2:+:51007786..51011551
Molecular Weight (calculated)
50070.0 Da
IEP (calculated)
8.505
GRAVY (calculated)
-0.124
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLFRFFAST ILLLFLISCF SFSSTDAFDP LDPNGNITIK WDVISWTPDG YVAVVTMYNF QQYRHIQAPG WSLGWTWAKK EVIWTMMGAQ TTEQGDCSKY
101: KGNIPHCCKK DPTVVDMLPG TPYNQQIANC CKGGVINSWG QDPATAVSSF QVSVGAAGTT NKTVRVPKNF TLKAPGPGYT CGPAKIVKST KFVSADGRRV
201: TQAMMTWNVT CTYSQFLAQK TPTCCVSLSS FYNDTIVPCP TCTCGCQSNG TQRGSCVDPE TPHLASVVSD HGKNNYVPLV QCTKHMCPIR IHWHVKLNYK
301: EYWRVKITIT NFNYRMNYTQ WNLVVQHPNF DNLTTLFSFN YKSLTPYGSI NDTAMLWGVK FYNDLLMQAG PSGNVQSELL FRKDASTFTF EKGWAFPHRI
401: YFNGDNCVMP PPDAYPFLPN AGSRWEASLI TLVVTLMSSM AVVLTYI
101: KGNIPHCCKK DPTVVDMLPG TPYNQQIANC CKGGVINSWG QDPATAVSSF QVSVGAAGTT NKTVRVPKNF TLKAPGPGYT CGPAKIVKST KFVSADGRRV
201: TQAMMTWNVT CTYSQFLAQK TPTCCVSLSS FYNDTIVPCP TCTCGCQSNG TQRGSCVDPE TPHLASVVSD HGKNNYVPLV QCTKHMCPIR IHWHVKLNYK
301: EYWRVKITIT NFNYRMNYTQ WNLVVQHPNF DNLTTLFSFN YKSLTPYGSI NDTAMLWGVK FYNDLLMQAG PSGNVQSELL FRKDASTFTF EKGWAFPHRI
401: YFNGDNCVMP PPDAYPFLPN AGSRWEASLI TLVVTLMSSM AVVLTYI
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.